Affinage · Plasmodium

HoBo

PF3D7_1409800 · CUGBP Elav-like family member 2, putative

Annotated
2026-09-08
9 papers in source corpus 4 papers cited in narrative 5 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CELF2 (PF3D7_1409800) is a constituent of Plasmodium translational repression machinery that operates through complex membership rather than autonomous RNA engagement. In P. falciparum asexual stages, direct in vitro assays established that CELF2 lacks detectable RNA-binding activity and captures only a negligible set of mRNAs, in sharp contrast to its paralog PfCELF1 (PMID:25447287). Despite this absence of intrinsic RNA binding, CELF2 is repeatedly recovered as a component of mRNP repression complexes: in P. yoelii it co-purifies with the CAF1/CCR4/NOT deadenylase complex alongside CAF1, NOT1, DOZI, CITH and PABP (PMID:30703164), and in P. falciparum it is found in PfDOZI-associated mRNPs that resemble processing bodies in schizonts and germ-cell-like granules in gametocytes (PMID:38702310). Proximity proteomics in P. yoelii place CELF2 as a stage-independent interactor of DOZI (in both female gametocytes and zygotes) and a stage-dependent interactor of ALBA4 (gametocytes but not zygotes), positioning it within the DOZI/CITH/ALBA translational repression complex (PMID:39777415). Beyond its membership in these repression complexes and the negative RNA-binding result, no autonomous molecular function has been characterized for CELF2 in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2014 Medium

    The central question of whether CELF2 is an autonomous RNA-binding regulator was answered by direct biochemistry, which distinguished it from its RNA-binding paralog and reframed how its function should be sought.

    Evidence UV-crosslinking, EMSA, and RNA immunoprecipitation-microarray (ribonomics) in P. falciparum, contrasted against PfCELF1

    PMID:25447287

    Open questions at the time
    • Negative RNA-binding result rests on a single lab and single study
    • Does not test whether CELF2 binds RNA in gametocyte or sexual stages
    • Does not exclude RNA association mediated indirectly through partner proteins
  2. 2019 Medium

    Given the absence of intrinsic RNA binding, the question became how CELF2 acts at all; IP-MS answered this by placing it inside the CAF1/CCR4/NOT deadenylase complex linked to translational repression.

    Evidence Reciprocal GFP-trap co-immunoprecipitation of PyCCR4-1::GFP followed by mass spectrometry with SAINT scoring in P. yoelii

    PMID:30703164

    Open questions at the time
    • Establishes co-complex membership but no direct functional assay of CELF2 within the complex
    • Does not resolve whether CELF2 contacts the complex directly or via bridging subunits
    • Single lab, single study
  3. 2024 Medium

    Whether CELF2's complex membership is confined to one context was addressed by showing it resides in DOZI-associated mRNPs of two distinct morphological types across life stages.

    Evidence Co-immunoprecipitation of PfDOZI::GFP coupled to mass spectrometry in P. falciparum schizonts and gametocytes

    PMID:38702310

    Open questions at the time
    • No direct functional assay of CELF2 itself within these mRNPs
    • Does not define what CELF2 contributes to granule assembly or repression
    • Single lab
  4. 2025 Medium

    Proximity proteomics refined the interaction architecture, showing CELF2 is a stage-independent DOZI neighbor but only a gametocyte-stage ALBA4 neighbor, mapping it into the DOZI/CITH/ALBA translational repression complex.

    Evidence TurboID-based proximity labeling and mass spectrometry comparing female gametocytes and zygotes in P. yoelii

    PMID:39777415

    Open questions at the time
    • Proximity does not establish direct physical contact
    • Functional consequence of the stage-dependent ALBA4 association is untested
    • Single lab, single study

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown what CELF2 contributes mechanistically to the repression complexes it inhabits, given that it lacks autonomous RNA binding.
  • No loss-of-function phenotype for CELF2 itself reported
  • No identified direct binding partner or structural interface within the complex
  • No demonstration that CELF2 modulates deadenylation or translational repression activity

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
CAF1/CCR4/NOT complexDOZI/CITH/ALBA translational repression complexPfDOZI-associated mRNPs

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 CELF2 (PfCELF2) was tested for RNA binding activity using UV-crosslinking and electrophoretic mobility shift assays and was found to be negative for RNA binding activity, in contrast to its paralog PfCELF1 which did bind RNA. UV-crosslinking assay and electrophoretic mobility shift assay (EMSA) Molecular and biochemical parasitology Medium 25447287
2014 RNA immunoprecipitation-microarray (ribonomics) analysis found that CELF2 (PfCELF2) bound to only 26 features from 22 mRNAs, indicating very few or no biologically relevant mRNA targets in asexual stages, in contrast to PfCELF1 which bound 1376 features from 1040 mRNAs. RNA immunoprecipitation coupled to DNA microarray (ribonomics) Molecular and biochemical parasitology Medium 25447287
2019 CELF2 (as CELF2/Bruno) was identified as a component of the CAF1/CCR4/NOT complex in Plasmodium yoelii through mass spectrometric analysis of immunoprecipitated PyCCR4-1::GFP, placing CELF2 in a complex with CAF1, NOT1, DOZI, CITH, and PABP that is associated with translational repression. Co-immunoprecipitation via GFP-trap followed by mass spectrometry (SAINT analysis) PLoS pathogens Medium 30703164
2024 CELF2 was identified as a component of PfDOZI-associated mRNPs in both schizonts (processing body-like mRNPs) and gametocytes (germ cell granule-like mRNPs) of P. falciparum, by immunoprecipitation of PfDOZI::GFP followed by mass spectrometry, indicating CELF2 participates in distinct mRNA regulatory complexes across life stages. Co-immunoprecipitation (GFP-trap) coupled to mass spectrometry Nature communications Medium 38702310
2025 CELF2 was identified as a stage-independent interactor of DOZI (present in both female gametocytes and zygotes) by TurboID-based proximity proteomics in P. yoelii, while CELF2 was also found as a stage-dependent interactor of ALBA4 in gametocytes (but not in zygotes), suggesting CELF2 participates in the DOZI/CITH/ALBA translational repression complex. TurboID-based proximity proteomics (proximity labeling followed by mass spectrometry) PLoS pathogens Medium 39777415

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Molecular characterization of Plasmodium falciparum Bruno/CELF RNA binding proteins. Molecular and biochemical parasitology 9 25447287
2025 Widespread release of translational repression across Plasmodium's host-to-vector transmission event. PLoS pathogens 0 39777415
2024 The DEAD-box RNA helicase PfDOZI imposes opposing actions on RNA metabolism in Plasmodium falciparum. Nature communications 0 38702310
2021 Plasmodium transcription repressor AP2-O3 regulates sex-specific identity of gene expression in female gametocytes. EMBO reports 0 33665945
2021 The Plasmodium NOT1-G paralogue is an essential regulator of sexual stage maturation and parasite transmission. PLoS biology 0 34673764
2019 Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex. PLoS pathogens 0 30703164
2018 Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development. Nature communications 0 29985403
2016 Translational regulation in blood stages of the malaria parasite Plasmodium spp.: systems-wide studies pave the way. Wiley interdisciplinary reviews. RNA 0 27230797
2016 Protein-mRNA interactome capture: cartography of the mRNP landscape. F1000Research 0 29098073