Affinage · Plasmodium

EXP3

PF3D7_1024800 · exported protein 3

Annotated
2026-09-08
9 papers in source corpus 4 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EXP3 (PF3D7_1024800) is a parasitophorous vacuole membrane-associated protein of Plasmodium that functions in the compartment where parasite effector proteins are staged for export into the host erythrocyte (PMID:37772444, PMID:33793667). In P. falciparum it is a component of the Exported Protein-Interacting Complex (EPIC), together with PV1 and PV2, and EPIC physically associates with the PTEX export translocon (including P113) (PMID:35403274); consistent with this, EXP3 is captured in proximity to the exported membrane protein SBP1 at an early, pre-export stage, placing it near cargo before translocation (PMID:37772444). Functionally, EXP3 behaves as an accessory rather than a core export factor: conditional depletion or disruption has little effect on bulk protein export or parasite fitness in vitro, while accessory factors of this class contribute to export of virulence-relevant effector subsets in vivo (PMID:33793667). The P. berghei ortholog (PBANKA_0509000) localizes to the PVM in both blood- and liver-stage parasites (PMID:29404413). Beyond its membership in EPIC and its PVM association, no direct enzymatic activity, structural model, or defined molecular mechanism for EXP3 itself has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2018 Medium

    Establishing where the EXP3 ortholog resides answered whether it acts at the host-parasite interface, localizing it to the parasitophorous vacuole membrane across life-cycle stages.

    Evidence BioID proximity biotinylation with BirA*-EXP1 plus fluorescence microscopy in P. berghei blood and liver stages

    PMID:29404413

    Open questions at the time
    • Localization shown for the P. berghei ortholog, not directly for PF3D7_1024800
    • Does not define a molecular function at the PVM
    • No membrane topology or orientation data
  2. 2021 Medium

    Genetic loss-of-function testing addressed whether EXP3 is required for export, showing it is an accessory, non-essential PTEX-associated factor dispensable for bulk export in vitro but implicated in effector export in vivo.

    Evidence Conditional knockdown/genetic disruption with growth and export assays in P. falciparum (as reviewed from primary literature)

    PMID:33793667

    Open questions at the time
    • Which specific effectors depend on EXP3 for export is not defined
    • The in vivo virulence contribution is inferred at the class level, not demonstrated for EXP3 individually
    • Mechanism by which an accessory factor aids selective export is unknown
  3. 2022 Medium

    Defining EXP3's physical context answered which complex it belongs to, placing it in EPIC (with PV1 and PV2) and linking that complex to the PTEX translocon.

    Evidence Co-immunoprecipitation of binding partners from in vitro P. falciparum cultures

    PMID:35403274

    Open questions at the time
    • Direct binding partners of EXP3 within EPIC not resolved (interface undefined)
    • Stoichiometry and architecture of EPIC unknown
    • Single-lab Co-IP without structural or reciprocal validation for EXP3 specifically
  4. 2023 Medium

    Time-resolved proximity mapping addressed whether EXP3 engages cargo before export, capturing it near the exported protein SBP1 at a pre-export stage.

    Evidence TurboID-SBP1 proximity biotinylation with label-free quantitative proteomics in P. falciparum

    PMID:37772444

    Open questions at the time
    • Proximity does not establish direct EXP3-SBP1 binding
    • No reciprocal Co-IP or mutagenesis confirming the interaction
    • Whether EXP3 acts on SBP1 handoff to PTEX is not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular activity of EXP3 within EPIC and how it selectively facilitates export of specific virulence effectors remain undefined.
  • No biochemical activity assigned to EXP3
  • No structure or membrane topology
  • Specific effector cargo dependent on EXP3 not identified

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Associates with the PTEX protein export translocon (including P113) [#1]Exported Protein-Interacting Complex (EPIC), with PV1 and PV2 [#1]

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 EXP3 (PF3D7_1024800) was identified as an interactor of the exported membrane protein SBP1 prior to its export (pre-export stage, 4 hpi), being 3-fold enriched at early time points in proximity-biotinylation experiments, consistent with its localization to the parasitophorous vacuole and a function in protein export. Time-resolved proximity biotinylation (TurboID fused to SBP1) combined with label-free quantitative proteomics Journal of cell science Medium 37772444
2022 EXP3 (PF3D7_1024800) was identified as a component of the Exported Protein-Interacting Complex (EPIC), which also comprises PV1 and PV2, and EPIC was shown to interact with the PTEX protein export machinery (including P113) by immunoprecipitation studies in P. falciparum. Co-immunoprecipitation / immunoprecipitation of binding partners from in vitro P. falciparum cultures Molecular microbiology Medium 35403274
2021 EXP3 (PF3D7_1024800) was reported as an accessory (non-essential) component of the PTEX protein export machinery at the parasitophorous vacuole membrane; conditional depletion or disruption of EXP3 has little to no observable impact on protein export or parasite fitness in vitro, but accessory factors including EXP3 appear to aid export of virulence-relevant effector subsets in vivo. Conditional knockdown / genetic disruption with parasite growth and protein export assays (as reviewed from primary experimental literature cited) PLoS pathogens Medium 33793667
2018 The P. berghei ortholog of EXP3 (PBANKA_0509000) was localized to the parasitophorous vacuole membrane (PVM) during both blood stage and liver stage development, identified by BioID proximity biotinylation using BirA* fused to EXP1 on the PVM. BioID proximity biotinylation (BirA*-EXP1 fusion) followed by affinity purification and LC-MS/MS; confirmed by fluorescence microscopy during blood and liver stage development mSphere Medium 29404413

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2025 Plasmodium knowlesi Heat Shock Protein 90s: In Silico Analysis Reveals Unique Druggable Structural Features. International journal of molecular sciences 0 41465491
2023 Histone modification analysis reveals common regulators of gene expression in liver and blood stage merozoites of Plasmodium parasites. Epigenetics & chromatin 0 37322481
2023 Time-resolved proximity biotinylation implicates a porin protein in export of transmembrane malaria parasite effectors. Journal of cell science 0 37772444
2022 Transcriptome Analysis of Plasmodium falciparum Isolates From Benin Reveals Specific Gene Expression Associated With Cerebral Malaria. The Journal of infectious diseases 0 35255125
2022 The Plasmodium falciparum parasitophorous vacuole protein P113 interacts with the parasite protein export machinery and maintains normal vacuole architecture. Molecular microbiology 0 35403274
2021 Transport mechanisms at the malaria parasite-host cell interface. PLoS pathogens 0 33793667
2021 Absence of PEXEL-Dependent Protein Export in Plasmodium Liver Stages Cannot Be Restored by Gain of the HSP101 Protein Translocon ATPase. Frontiers in genetics 0 34956312
2020 Comparative structural insight into prefoldin subunints of archaea and eukaryotes with special emphasis on unexplored prefoldin of Plasmodium falciparum. Journal of biomolecular structure & dynamics 0 33272134
2018 BioID Reveals Novel Proteins of the Plasmodium Parasitophorous Vacuole Membrane. mSphere 0 29404413