Affinage · Plasmodium

FBPA

PF3D7_1444800 · fructose-bisphosphate aldolase

Annotated
2026-09-08
12 papers in source corpus 10 papers cited in narrative 10 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

FBPA (PF3D7_1444800) is a class I fructose-1,6-bisphosphate aldolase that acts both as a glycolytic enzyme and as a structural bridge in the Plasmodium falciparum invasion motor (PMID:9521758, PMID:16321976). It is a single-copy gene product that forms a homotetramer, and its crystal structure diverges from human aldolase through a unique hydrophobic surface pocket and a reduced tetramer interface (PMID:9521758). A soluble, enzymatically active form localizes to the parasite cytoplasm, while an inactive membrane-associated form has also been detected (PMID:2190085). Beyond its catalytic role, FBPA physically links the actin-myosin motor to invasion adhesins: it binds the C-terminal cytoplasmic tails of the TRAP-family adhesins TRAP and MTRAP, of AMA1, and of members of the EBL and RH ligand families through an induced-fit mechanism in which an aromatic residue of the ligand tail inserts into a hydrophobic pocket, causing arginine rotamer changes and a helix-loop-helix subdomain shift (PMID:17426153, PMID:16321976, PMID:22991428, PMID:27607074). These adhesin tails compete for overlapping binding sites on FBPA, and phosphorylation of the MTRAP tail by CDPK1 and PKA increases FBPA binding affinity ~10-fold (PMID:27607074). FBPA simultaneously binds both G- and F-actin with high affinity and promotes actin polymerization, providing the second half of the mechanical link (PMID:25261592). The FBPA-TRAP interaction is functionally required for motility: a small molecule stabilizing the complex reduces liver-cell invasion by ~95% and blocks gliding (PMID:26289816).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1990 Medium

    Establishing that FBPA is a genuine catalytic aldolase defined its baseline identity before any moonlighting role was known.

    Evidence gene cloning and expression of enzymatically active recombinant protein in E. coli, with cell fractionation showing cytoplasmic and membrane-associated forms

    PMID:2190085

    Open questions at the time
    • GPI-anchor-mediated membrane association inferred from phospholipase C digestion, not directly demonstrated
    • functional significance of the inactive membrane form unresolved
  2. 1992 Medium

    Kinetic characterization showed the parasite aldolase is enzymatically distinct from mammalian isoenzymes, indicating a divergent enzyme rather than a host contaminant.

    Evidence recombinant expression and Km/Vmax kinetics of P. berghei aldolase isoenzymes with stage-specific immunodetection

    PMID:1625704

    Open questions at the time
    • performed on P. berghei isoenzymes, not directly on PF3D7_1444800
    • stage-specific expression pattern not mapped in P. falciparum
  3. 1994 Medium

    Defining the pre-mRNA splicing that supplies the initiation codon clarified prior anomalous cDNA clones and the gene architecture of the aldolase locus.

    Evidence reverse-PCR cDNA sequencing, in vitro translation, and Northern blot in P. berghei aldo-2

    PMID:8008025

    Open questions at the time
    • shown for P. berghei aldo-2, not PF3D7_1444800
    • regulatory role of accumulated unspliced precursor unknown
  4. 1998 High

    The crystal structure revealed parasite-specific features—a unique hydrophobic surface pocket and altered tetramer interface—establishing structural targets distinguishing FBPA from human aldolase.

    Evidence X-ray crystallography at 3.0 Å (homotetramer)

    PMID:9521758

    Open questions at the time
    • functional role of the unique surface pocket not addressed at this stage
    • no ligand bound
  5. 2005 Medium

    Demonstrating FBPA binding to the MTRAP cytoplasmic tail positioned it as the physical bridge between an invasion adhesin and the actin-myosin motor in merozoites.

    Evidence in vitro binding assay of MTRAP cytoplasmic tail to aldolase plus co-localization

    PMID:16321976

    Open questions at the time
    • binding not yet linked to actin at structural resolution
    • in vivo requirement not tested
  6. 2007 High

    Co-crystallization with the TRAP tail defined the induced-fit binding mechanism and revealed that the adhesin- and actin-binding sites overlap, explaining how one aldolase could couple two partners.

    Evidence X-ray structures at 2.4 and 2.7 Å of FBPA with TRAP hexapeptide plus site-directed mutagenesis

    PMID:17426153

    Open questions at the time
    • actin binding at the overlapping site inferred, not co-crystallized
    • consequence for catalytic activity during binding not defined
  7. 2012 High

    Extending the binding repertoire to RH-family ligand tails defined the sequence rules (an aromatic residue flanked by acidic residues) and showed selectivity among ligands.

    Evidence surface plasmon resonance, 2.5 Å crystal structure with RH2b peptide, aromatic-residue analysis

    PMID:22991428

    Open questions at the time
    • basis for selectivity (RH2b vs RH2a, DBL exclusion) not fully mechanistically explained
    • in vivo relevance of each ligand interaction untested
  8. 2014 High

    Quantifying high-affinity binding to both G- and F-actin and showing FBPA promotes actin polymerization established that FBPA actively contributes to the actin half of the motor linkage.

    Evidence biolayer interferometry, co-sedimentation, and actin polymerization assays

    PMID:25261592

    Open questions at the time
    • structural basis of actin binding not resolved
    • polymerization effect not tested in intact motor context
  9. 2015 High

    A small molecule stabilizing the FBPA-TRAP complex blocking invasion provided direct functional proof that this protein-protein interaction is required for motility and invasion.

    Evidence virtual screening, ternary FBPA-TRAP-compound 24 crystal structure, gliding and liver-cell invasion assays (~95% reduction)

    PMID:26289816

    Open questions at the time
    • genetic ablation of the interaction not performed
    • distinction between glycolytic and scaffold contributions to the phenotype not resolved
  10. 2016 High

    Mapping the full adhesin binding set, defining CTD sequence requirements, and demonstrating phosphorylation-enhanced binding integrated FBPA into a regulatable hub coupling multiple ligands to actin.

    Evidence quantitative binding, CTD mutagenesis, CDPK1/PKA kinase assays, competition assays, and in-parasite MTRAP phosphorylation analysis

    PMID:27607074

    Open questions at the time
    • MTRAP phosphorylation not detected in asexual blood-stage parasites, leaving the in vivo trigger unresolved
    • physiological hierarchy among competing ligands unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether the glycolytic and scaffolding functions of FBPA can be genetically separated, and how binding is regulated during native invasion, remains open.
  • no genetic separation-of-function mutant reported
  • in vivo phosphorylation trigger for enhanced binding not established
  • functional role of the membrane-associated inactive form unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
FBPA homotetramerFBPA-MTRAP cytoplasmic tail complexFBPA-RH2b peptide complexFBPA-TRAP cytoplasmic tail complexFBPA-TRAP-compound 24 ternary complexglideosome actin-myosin invasion motor link

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 FBPA (PF3D7_1444800) is a class I fructose-1,6-bisphosphate aldolase that forms a homotetramer (80 kDa dimer per asymmetric unit). X-ray crystal structure at 3.0 Å resolution revealed a unique hydrophobic surface pocket resulting from amino acid changes and a single residue deletion relative to human aldolase, and reduced buried surface area in the tetramer interface compared to human aldolase. X-ray crystallography (crystal structure determination, R-factor 0.239, R-free 0.329, 3.0 Å resolution) Biochemistry High 9521758
2007 FBPA (PF3D7_1444800) binds the C-terminal cytoplasmic tail of TRAP via an induced-fit mechanism: the penultimate Trp residue of TRAP inserts into a hydrophobic pocket formed exclusively by hydrophilic residues (two Arg, one Glu, one Gln) of FBPA; two Arg residues adopt new side-chain rotamers and a 25-residue helix-loop-helix subdomain shifts upon TRAP-tail binding. Mutagenesis of FBPA residues in and near this induced pocket decreased TRAP binding. The TRAP- and actin-binding sites on FBPA appear to overlap. X-ray crystallography (2.4 Å and 2.7 Å structures of FBPA co-crystallized with TRAP C-terminal hexapeptide) combined with site-directed mutagenesis of FBPA binding-site residues Proceedings of the National Academy of Sciences of the United States of America High 17426153
1990 FBPA (PF3D7_1444800) is encoded by a single-copy gene interrupted by one intron; the protein (40,105 Da) was expressed in E. coli in enzymatically active form. In the parasite, an active soluble form localises to the cytoplasm, and an inactive form associates with the membrane fraction; phospholipase C digestion data suggest membrane association is mediated via a glycosylphosphatidylinositol (GPI) anchor. Gene cloning and expression in E. coli (enzymatic activity assay), cell fractionation, phospholipase C digestion, immunoblotting with antisera against residues 9–96 Molecular and biochemical parasitology Medium 2190085
1992 In Plasmodium berghei, two aldolase isoenzymes (ALDO-1 and ALDO-2) are expressed in a stage-specific manner: ALDO-1 (virtually identical in sequence to P. falciparum FBPA) is detected in sporozoite stages, while ALDO-2 is expressed in blood stages. Recombinant ALDO-2 expressed in E. coli is enzymatically active; Km and Vmax constants for FBP and FMP differ from mammalian isoenzymes and cannot be assigned to any known mammalian class. Gene cloning, recombinant expression in E. coli with enzymatic kinetic assays (Km/Vmax), immunoblotting with stage-specific antibodies Molecular and biochemical parasitology Medium 1625704
2005 FBPA (PF3D7_1444800) is present in P. falciparum merozoites and its in vitro binding to the cytoplasmic tail of the merozoite adhesin MTRAP (a TRAP-family micronemal protein) was demonstrated, placing FBPA as the link between MTRAP and the actin-myosin motor complex in erythrocyte invasion. In vitro binding assay (cytoplasmic tail of MTRAP binding to aldolase), immunofluorescence/co-localisation The Journal of biological chemistry Medium 16321976
2012 FBPA (PF3D7_1444800) binds the cytoplasmic tails of select P. falciparum merozoite RH (reticulocyte homology) ligands (e.g. RH2b but not RH2a) at affinities similar to TRAP, dependent on an aromatic residue (phenylalanine or tyrosine, not tryptophan) flanked by negatively charged amino acids. A 2.5 Å X-ray crystal structure of FBPA with the RH2b peptide showed the binding site is near the TRAP-binding site. FBPA did not similarly bind tested DBL-family cytoplasmic tails. Surface plasmon resonance, X-ray crystallography (2.5 Å), peptide binding assays, site-directed analysis of aromatic residue requirements mBio High 22991428
2014 FBPA (PF3D7_1444800) binds both rabbit and P. falciparum actin (filamentous F-actin and globular G-actin) with high and similar affinity, as measured by biolayer interferometry, and this interaction was confirmed by co-sedimentation assay. FBPA binding promotes actin polymerization, indicating the interaction is more than passive binding. Biolayer interferometry (quantitative binding), co-sedimentation assay, actin polymerization assay Molecular and biochemical parasitology High 25261592
2015 A small molecule (compound 24) that stabilizes the FBPA–TRAP complex inhibits gliding motility and host cell invasion. A high-resolution ternary X-ray crystal structure of FBPA–TRAP–compound 24 confirms the binding mode at the FBPA–TRAP interface. Liver cell invasion was reduced by ~95% in the presence of compound 24, demonstrating that the FBPA–TRAP interaction is functionally required for invasion. Virtual library screening, biochemical/biophysical compound characterisation, ternary X-ray crystal structure, in vitro parasite gliding and invasion assays Malaria journal High 26289816
2016 FBPA (PF3D7_1444800) binds the cytoplasmic tail domains (CTDs) of TRAP, MTRAP, AMA1, and members of the EBL and RH protein families; MTRAP CTD binding requires more than the C-terminal six residues and single amino acid substitutions in MTRAP CTD abolished aldolase binding. MTRAP CTD is phosphorylated in vitro by CDPK1 and PKA, and phosphorylation increases FBPA binding affinity ~10-fold. MTRAP competed with AMA1 and RH4 for overlapping binding sites on FBPA. No phosphorylation of MTRAP was detected in asexual blood-stage parasites expressing GFP-tagged MTRAP. Direct in vitro binding assay (quantitative), site-directed mutagenesis of MTRAP CTD, in vitro kinase assays (CDPK1, PKA), affinity measurements, competition binding assay, GFP-tagging and purification of MTRAP from parasites with phosphorylation analysis PloS one High 27607074
1994 In Plasmodium berghei, the aldo-2 mRNA is processed by pre-mRNA splicing that appends an AUG initiation codon to the exon; a UAG codon at the beginning of the aldo-2 coding sequence is not used as an initiation codon in vitro. Substantially unspliced (partially spliced) aldo-2 precursor mRNA accumulates in vivo, which explains previously isolated P. falciparum aldolase cDNA clones starting with a stop codon. Reverse-PCR cDNA sequencing, in vitro translation, Northern blot analysis Molecular and biochemical parasitology Medium 8008025

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 A conserved molecular motor drives cell invasion and gliding motility across malaria life cycle stages and other apicomplexan parasites. The Journal of biological chemistry 291 16321976
2007 Aldolase provides an unusual binding site for thrombospondin-related anonymous protein in the invasion machinery of the malaria parasite. Proceedings of the National Academy of Sciences of the United States of America 67 17426153
1998 Crystal structure of fructose-1,6-bisphosphate aldolase from the human malaria parasite Plasmodium falciparum. Biochemistry 67 9521758
1990 Plasmodium falciparum aldolase: gene structure and localization. Molecular and biochemical parasitology 59 2190085
1992 Stage-specific expression of aldolase isoenzymes in the rodent malaria parasite Plasmodium berghei. Molecular and biochemical parasitology 24 1625704
2015 Inhibition by stabilization: targeting the Plasmodium falciparum aldolase-TRAP complex. Malaria journal 23 26289816
2014 Plasmodium falciparum aldolase and the C-terminal cytoplasmic domain of certain apical organellar proteins promote actin polymerization. Molecular and biochemical parasitology 15 25261592
2013 PfHPRT: a new biomarker candidate of acute Plasmodium falciparum infection. Journal of proteome research 14 23339668
2012 Binding of aldolase and glyceraldehyde-3-phosphate dehydrogenase to the cytoplasmic tails of Plasmodium falciparum merozoite duffy binding-like and reticulocyte homology ligands. mBio 13 22991428
2016 The Binding of Plasmodium falciparum Adhesins and Erythrocyte Invasion Proteins to Aldolase Is Enhanced by Phosphorylation. PloS one 7 27607074
2014 Proteomics analysis of antimalarial targets of Garcinia mangostana Linn. Asian Pacific journal of tropical biomedicine 4 25183269
1994 Regular initiation of translation of Plasmodium berghei aldolase-2 after pre-mRNA splicing. Molecular and biochemical parasitology 1 8008025