Affinage · Plasmodium

PF3D7_1424400

60S ribosomal protein L7-3, putative

Annotated
2026-09-08
12 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_1424400 (L7, 60S ribosomal protein L7-3, putative) is a structural component of the large (60S) subunit of the P. falciparum 80S ribosome, established by a 3.2 Å cryo-EM structure that resolved it as a constituent of the assembled ribosomal complex without assigning it a distinct catalytic or regulatory role beyond ribosome composition (PMID:24913268). Beyond this membership assignment, no experiment in the available corpus assigns a specific binding partner, substrate, or independent function to L7 itself; broader analyses of stage-specific ribosome heterogeneity and in situ translating-ribosome states place 60S large-subunit proteins of the L7 family in the malarial ribosome but do not characterize PF3D7_1424400 individually (PMID:37053161, PMID:40825879). No further mechanistic detail specific to L7 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2014 Medium

    Whether L7/PF3D7_1424400 is part of the assembled P. falciparum ribosome was resolved by placing it structurally within the 60S large subunit, establishing it as a bona fide ribosomal protein of the parasite 80S complex.

    Evidence Cryo-EM structure of the P. falciparum 80S ribosome at 3.2 Å resolution

    PMID:24913268

    Open questions at the time
    • No specific catalytic, regulatory, or binding function assigned to L7 beyond ribosome membership
    • No experiment directed at L7 itself; role inferred from the structural map
    • No interaction partners or substrates identified for L7 individually
  2. 2023 Low

    Whether 60S ribosomal protein composition varies across the parasite life cycle was addressed by ribosome-heterogeneity analysis, placing L7-family large-subunit proteins in distinct stage-specific ribosome variants, though not resolving L7/PF3D7_1424400 individually.

    Evidence Structural and comparative analysis of stage-specific Plasmodium ribosomes (cryo-EM and proteomics)

    PMID:37053161

    Open questions at the time
    • Abstract does not specify L7/PF3D7_1424400 individually; membership in the heterogeneous pool is inferred from general L7-family findings
    • No functional consequence attributed to L7 in any specific life-cycle stage
    • Whether L7 itself is present or absent in specific variants is not established
  3. 2025 Low

    Whether native, actively translating parasite ribosomes could be visualised in their cellular context was addressed by in situ cryo-electron tomography, resolving 60S large-subunit components including L7 as structural constituents of translating 80S ribosomes.

    Evidence In situ cryo-electron tomography of native ribosomes in P. falciparum-infected human erythrocytes, with perturbation by a Plasmodium-specific translation inhibitor

    PMID:40825879

    Open questions at the time
    • Abstract does not name L7/PF3D7_1424400 specifically; membership inferred from general 80S large-subunit analysis
    • No L7-specific contribution to elongation-factor binding or ribosome biogenesis established
    • The inhibitor effect is a ribosome-level observation, not an L7-directed one

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether L7/PF3D7_1424400 has any function beyond being a structural component of the 60S subunit — a specific role in assembly, translation regulation, or non-ribosomal activity — remains unaddressed.
  • No experiment isolates or perturbs L7 individually
  • No binding partners or substrates identified for L7 beyond the ribosome
  • No genetic or biochemical test of L7 essentiality or function

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
P. falciparum 80S ribosome large (60S) subunit

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 PF3D7_1424400 (L7, 60S ribosomal protein L7-3) was resolved as a structural component of the P. falciparum 80S ribosome large subunit at 3.2 Å resolution by cryo-EM; the structure established its membership in the assembled 80S ribosomal complex but did not assign a specific mechanistic role to L7 beyond ribosome composition. Cryo-EM structure determination at 3.2 Å resolution of the P. falciparum 80S ribosome eLife Medium 24913268
2023 Ribosome heterogeneity studies in Plasmodium parasites indicate that large-subunit proteins including members of the L7 family occupy distinct positions in stage-specific ribosome variants, establishing that 60S ribosomal protein composition (which encompasses L7/PF3D7_1424400) differs across parasite life-cycle stages. Structural and comparative analysis of stage-specific ribosomes (cryo-EM and proteomics) PLoS pathogens Low 37053161
2025 In situ cryo-electron tomography of native P. falciparum 80S ribosomes in actively translating states inside infected erythrocytes resolved eight high-resolution structures of the malarial ribosome, within which 60S large-subunit components (including L7/PF3D7_1424400 as a structural constituent) were visualised; perturbation with a Plasmodium-specific translation inhibitor decreased elongation factor-bound ribosomal states and appeared to upregulate ribosome biogenesis. In situ cryo-electron tomography of native ribosomes in P. falciparum-infected human erythrocytes Nature structural & molecular biology Low 40825879

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. eLife 272 24913268
2017 Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis. Nature microbiology 136 28288098
2015 Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic acids research 45 26432834
2020 Plasmodium falciparum translational machinery condones polyadenosine repeats. eLife 21 32469313
2023 Ribosome heterogeneity and specialization of Plasmodium parasites. PLoS pathogens 13 37053161
2010 Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum. BMC genomics 12 20078859
2019 Adaptation of Translational Machinery in Malaria Parasites to Accommodate Translation of Poly-Adenosine Stretches Throughout Its Life Cycle. Frontiers in microbiology 11 31866984
2025 Integrated structural biology of the native malarial translation machinery and its inhibition by an antimalarial drug. Nature structural & molecular biology 7 40825879
2021 Structural analysis of the SRP Alu domain from Plasmodium falciparum reveals a non-canonical open conformation. Communications biology 6 34017052
2025 Antimalarial drug artemisinin stabilizes PfRACK1 binding to the ribosome. Structure (London, England : 1993) 3 40480224
2025 MAP-X reveals distinct protein complex dynamics across Plasmodium falciparum blood stages. Nature microbiology 2 41315737
2026 Targeting protein-protein interactions in Plasmodium: from asexual replication to sexual development. Parasites & vectors 0 42001110