Affinage · Plasmodium

PF3D7_1367200

CLAMP domain-containing protein, putative

Audit flag: identity unverified
Annotated
2026-09-08
4 papers in source corpus 4 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_1367200 (CLAMP) is a conserved microneme protein essential for host-cell invasion across multiple Plasmodium life-cycle stages (PMID:36928686, PMID:39849074). In P. falciparum and P. berghei, CLAMP is required for asexual blood-stage growth, with conventional deletion refractory and conditional deletion establishing an essential role in erythrocyte invasion by merozoites (PMID:36928686, PMID:39849074). In P. berghei transmission stages, CLAMP is additionally required for sporozoite gliding motility, cell traversal, and invasion of mosquito salivary glands and mammalian hepatocytes, positioning it upstream of productive host-cell entry (PMID:36928686). CLAMP-deficient sporozoites show reduced shedding of the adhesin TRAP, and CLAMP partially colocalizes with TRAP in a subset of micronemes while accumulating distinctly at the apical tip (PMID:36928686). In Toxoplasma gondii, CLAMP forms a conserved microneme complex with SPATR and CLIP, and both CLAMP and CLIP orthologs are distributed across apicomplexans; deletion of clip in P. berghei phenocopies clamp deletion across all invasive stages, supporting a shared CLAMP-CLIP-SPATR complex mechanism for invasion (PMID:37886905, PMID:41929181). Beyond its essentiality, its complex membership, and its correlation with TRAP shedding, the direct biochemical mechanism by which PF3D7_1367200 CLAMP regulates invasion has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2023 High

    Whether CLAMP has an essential role in Plasmodium was unknown; conditional deletion established that it is required for asexual blood-stage growth and erythrocyte invasion.

    Evidence Conditional genome editing (DiCre) in P. berghei with refractory conventional deletion in P. falciparum; growth and invasion analysis

    PMID:36928686 PMID:39849074

    Open questions at the time
    • The molecular activity of CLAMP during invasion was not defined
    • Whether the invasion defect is due to failed attachment, rhoptry discharge, or motility was not resolved at this stage
  2. 2023 High

    It was unclear whether CLAMP function extended beyond blood stages; conditional deletion in transmission stages showed it is required for sporozoite gliding, traversal, and invasion, generalizing its role to multiple invasive stages.

    Evidence Conditional gene deletion (DiCre) in P. berghei transmission stages with gliding motility, cell traversal, and productive invasion assays

    PMID:36928686

    Open questions at the time
    • The step at which motility/invasion fails was not mechanistically dissected
    • Whether reduced TRAP shedding is causal or a downstream consequence was not established
  3. 2023 Medium

    The subcellular basis for CLAMP's invasion role was unknown; expansion microscopy placed CLAMP at the sporozoite apical tip and in a subset of TRAP-containing micronemes, tying it to adhesin secretion.

    Evidence Expansion microscopy and colocalization with TRAP in P. berghei sporozoites

    PMID:36928686

    Open questions at the time
    • Localization rests on a single microscopy method without direct biochemical validation
    • Direct interaction between CLAMP and TRAP was not demonstrated
  4. 2023 Medium

    Whether CLAMP acts alone or in a complex was unknown; work in T. gondii identified a conserved CLAMP-SPATR-CLIP microneme complex linked to rhoptry discharge, providing a candidate molecular context for CLAMP function.

    Evidence Biochemical/genetic complex identification and knockdown showing rhoptry discharge defect in T. gondii; phylogenetic analysis; inference from prior P. falciparum blood-stage data

    PMID:37886905

    Open questions at the time
    • Complex membership was established in T. gondii, not directly in Plasmodium
    • Direct role of Plasmodium CLAMP in rhoptry discharge was not tested biochemically
  5. 2025 Medium

    The blood-stage essentiality inferred from refractory deletion needed direct confirmation; a clean conditional KO confirmed CLAMP is required for merozoite erythrocyte invasion.

    Evidence Conditional KO using constitutive Cas9 plus rapamycin-inducible DiCre in P. berghei; growth and invasion assays

    PMID:39849074

    Open questions at the time
    • Single confirmatory study
    • Mechanistic step of invasion failure not resolved
  6. 2026 Medium

    Whether the CLAMP-CLIP-SPATR complex functions as a unit in Plasmodium was open; clip deletion phenocopying clamp deletion across all invasive stages supported a conserved, functionally coupled complex.

    Evidence CRISPR-assisted conditional deletion (DiCre) of clip in P. berghei blood and transmission stages; growth, motility, traversal, and invasion assays (preprint)

    PMID:41929181

    Open questions at the time
    • Preprint, single lab, not yet peer-reviewed
    • Phenocopy is genetic; direct physical interaction of CLAMP and CLIP in Plasmodium not biochemically shown here
    • The shared molecular function of the complex remains undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct biochemical activity of CLAMP—how it regulates adhesin shedding and/or rhoptry discharge and whether it binds TRAP, CLIP, or SPATR directly in Plasmodium—remains unresolved.
  • No structural model or direct binding data for Plasmodium CLAMP
  • Causality between CLAMP loss and reduced TRAP shedding unestablished
  • No direct demonstration of CLAMP-dependent rhoptry discharge in Plasmodium

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
CLAMP-CLIP-SPATR microneme complex (established in T. gondii; genetically supported in P. berghei)

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 CLAMP (PF3D7_1367200) is essential for Plasmodium falciparum asexual blood stage growth; conventional gene deletion is refractory, indicating an essential role in erythrocyte invasion. Conditional genome editing (dimerisable Cre recombinase) in P. berghei; gene deletion and functional analysis PLoS pathogens High 36928686 39849074
2023 CLAMP is essential for gliding motility and invasion of mosquito salivary glands and mammalian hepatocytes by P. berghei sporozoites; CLAMP-deficient sporozoites show reduced shedding of the sporozoite adhesin TRAP. Conditional gene deletion (DiCre) in P. berghei transmission stages; gliding motility assays, cell traversal assays, productive invasion assays, expansion microscopy for colocalization with TRAP PLoS pathogens High 36928686
2023 CLAMP partially colocalizes with the adhesin TRAP in a subset of micronemes and accumulates distinctly at the apical tip of P. berghei sporozoites, placing it upstream of host cell invasion. Expansion microscopy and colocalization analysis in P. berghei sporozoites PLoS pathogens Medium 36928686
2023 CLAMP forms a conserved microneme protein complex with SPATR and CLIP (CLAMP-Linked Invasion Protein) in Toxoplasma gondii; phylogenetic analysis indicates that CLAMP and CLIP orthologs are ubiquitous across apicomplexans, and SPATR is also essential for P. falciparum blood-stage invasion. Complex identification (biochemical/genetic analysis in T. gondii); phylogenetic analysis; knockdown of each complex member showing rhoptry discharge defect The EMBO journal Medium 37886905
2025 Conditional deletion of clamp in P. berghei blood stages (using a dual CRISPR/Cas9 + DiCre parasite line) confirmed the essential role of CLAMP during erythrocyte invasion by merozoites. Conditional KO using constitutive Cas9 + rapamycin-inducible DiCre in P. berghei; growth and invasion assays Scientific reports Medium 39849074
2026 CLIP (the CLAMP-linked invasion protein) and CLAMP form a conserved complex in P. berghei; deletion of clip phenocopies deletion of clamp, causing defects in erythrocyte invasion by merozoites, salivary gland invasion by sporozoites, cell traversal, hepatocyte invasion, and gliding motility, supporting a conserved CLAMP-CLIP-SPATR complex essential across invasive stages. CRISPR-assisted conditional gene deletion (DiCre) of clip in P. berghei blood and transmission stages; growth assays, gliding motility assays, cell traversal, invasion assays bioRxivpreprint Medium 41929181

Source papers

Stage 0 corpus · 4 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2023 A conserved complex of microneme proteins mediates rhoptry discharge in Toxoplasma. The EMBO journal 21 37886905
2023 The claudin-like apicomplexan microneme protein is required for gliding motility and infectivity of Plasmodium sporozoites. PLoS pathogens 17 36928686
2025 Constitutive expression of Cas9 and rapamycin-inducible Cre recombinase facilitates conditional genome editing in Plasmodium berghei. Scientific reports 2 39849074
2026 The CLAMP-Linked Invasion Protein (CLIP) plays an essential role in Plasmodium berghei zoites. bioRxiv : the preprint server for biology 0 41929181