Affinage · Plasmodium

CAF1B

PF3D7_1329300 · chromatin assembly factor 1 subunit B, putative

Annotated
2026-09-08
3 papers in source corpus 2 papers cited in narrative 2 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_1329300 (CAF1B) is a subunit of the Plasmodium falciparum chromatin assembly factor 1 (CAF1) complex that functions as a histone chaperone in heterochromatin maintenance and nucleosome assembly (PMID:29183721). Within this complex it associates with PfCAF2, histones, and the heterochromatin protein PfHP1, and it co-localizes with PfHP1 at telomeric repeat regions and subtelomeric and central var gene loci, linking it to the chromatin organization that underlies var gene silencing (PMID:29183721). Its upregulation following genotoxic treatment implicates the complex in DNA damage responses (PMID:29183721). Beyond its CAF1 membership, CAF1B is detected as a proximity interactor of the histone methyltransferase PfSET10 in blood-stage nuclei, placing it within a broader nuclear chromatin-remodeling network (PMID:39445823). No direct functional characterization of CAF1B itself — through mutagenesis, in vitro reconstitution, or gene disruption — has been reported in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2017 Medium

    Establishing whether PF3D7_1329300 participates in Plasmodium chromatin organization required defining its physical partners and genomic occupancy; this work placed it in the CAF1 histone chaperone complex at heterochromatic loci.

    Evidence Co-immunoprecipitation with PfCAF2, histones, and PfHP1, plus ChIP at telomeric and var gene loci and upregulation after MMS/HU treatment, in P. falciparum

    PMID:29183721

    Open questions at the time
    • No in vitro reconstitution or mutagenesis to confirm a direct histone-chaperone activity for CAF1B specifically
    • Contribution of CAF1B relative to other complex subunits to var gene silencing is not resolved
    • The mechanistic link between genotoxic upregulation and a defined DNA damage repair role is not established
  2. 2024 Low

    Whether CAF1B connects to other chromatin-modifying machineries was addressed by proximity mapping around PfSET10, extending its network beyond the CAF1 complex.

    Evidence TurboID proximity-labeling coupled with mass spectrometry in PfSET10-KO/KD lines, in P. falciparum

    PMID:39445823

    Open questions at the time
    • Proximity labeling establishes association but not a direct or functional CAF1B–PfSET10 interaction
    • No functional consequence of the CAF1B–PfSET10 association was tested
    • Does not distinguish a role for CAF1B from other network members detected in the same experiment

Open questions

Synthesis pass · forward-looking unresolved questions
  • The intrinsic biochemical activity of CAF1B and its non-redundant contribution to nucleosome assembly, var gene silencing, and DNA damage responses remain undefined.
  • No targeted gene disruption or conditional knockdown of CAF1B itself
  • No structural or reconstituted-complex data assigning function to CAF1B
  • Direct histone-binding activity of CAF1B has not been demonstrated in isolation

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Chromatin assembly factor 1 (CAF1) complex

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2017 PF3D7_1329300 (CAF1B) was identified as part of the P. falciparum chromatin assembly factor 1 (CAF1) complex, which interacts with PfCAF2, histones, and PfHP1, and localizes to telomeric repeat regions and subtelomeric/central var gene loci together with PfHP1, implicating it in heterochromatin maintenance and nucleosome assembly as a histone chaperone. Co-immunoprecipitation (interaction with PfCAF2, histones, PfHP1); chromatin immunoprecipitation (ChIP) at telomeric and var gene loci; upregulation assay after genotoxic treatment (MMS, HU) Biochemical and biophysical research communications Medium 29183721
2024 PF3D7_1329300 (CAF1B) was identified as an interaction partner of the histone methyltransferase PfSET10 in P. falciparum blood-stage nuclei, placing it within a broader chromatin modulation network that includes chromatin remodeling proteins (PfISWI, PfSWIP, PfSNF2L, PfCAF1A) involved in DNA replication, transcription, and mRNA processing. TurboID proximity-labeling coupled with mass spectrometry (PfSET10-KO/KD lines) mSphere Low 39445823

Source papers

Stage 0 corpus · 3 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2017 Role of Chromatin assembly factor 1 in DNA replication of Plasmodium falciparum. Biochemical and biophysical research communications 8 29183721
2025 Histone lactylation: A new epigenetic mark in the malaria parasite Plasmodium. PLoS genetics 0 41417877
2024 The Plasmodium falciparum histone methyltransferase SET10 participates in a chromatin modulation network crucial for intraerythrocytic development. mSphere 0 39445823