Affinage · Plasmodium

SEC63

PF3D7_1318800 · translocation protein SEC63, putative

Annotated
2026-09-08
9 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_1318800 (PfSec63) is a putative transmembrane ER-resident HSP40/J-domain co-chaperone assigned to the Sec-family protein translocation machinery of Plasmodium falciparum on the basis of bioinformatic and comparative-genomics analyses (PMID:17919451, PMID:26167469). Within this framework it is placed alongside the PfSec61 translocon and is proposed to function together with the ER-lumenal chaperone PfHsp70-2 (a BiP homologue) to drive co- and post-translational translocation of signal-peptide-containing proteins into the ER (PMID:26167469, PMID:20719001). It has additionally been described as an auxiliary component of specialized Sec61 channels dedicated to translocation of PEXEL-containing exported proteins, where plasmepsin V is co-associated (PMID:34440567). Its role as a J-domain activator of PfHsp70-2 has been modeled in silico, and the PfHsp70-2–PfSec63 complex has served as a virtual-screening target (PMID:37621993). No direct biochemical, genetic, or structural experiment on PF3D7_1318800 itself is present in the available corpus; every claim above rests on computational prediction, expression-based network inference, or review-level extrapolation, and the two candidate interactors (MAL8P1.153 and PFI1780w) reported for it are predicted rather than experimentally validated (PMID:20719001).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2007 Low

    Establishing whether P. falciparum possesses a Sec63 orthologue was the first step in defining its ER translocation machinery; a genome-wide search identified PF3D7_1318800 as a putative member of the Sec61/Sec62/Sec63 complex.

    Evidence Bioinformatics/comparative genomics of the P. falciparum genome

    PMID:17919451

    Open questions at the time
    • Computational prediction only; no experimental confirmation that PF3D7_1318800 is expressed as a translocon component
    • No demonstration of physical association with Sec61
    • No localization data
  2. 2010 Low

    To place PF3D7_1318800 in a functional context, expression profiling and network construction annotated it as a transmembrane ER HSP40 for signal-peptide protein translocation and predicted candidate partners within the parasite chaperone network.

    Evidence Expression profiling of clinical isolates with Cytoscape-based interactome network inference

    PMID:20719001

    Open questions at the time
    • Predicted interactors MAL8P1.153 and PFI1780w were not validated by Co-IP or pulldown
    • Membrane topology and ER residence not experimentally shown
    • Functional role in translocation not tested
  3. 2015 Low

    A synthesis of chaperone-pathway data proposed PF3D7_1318800 as a membrane-bound co-chaperone acting with PfHsp70-2 (BiP) and the PfSec61 translocon to mediate ER secretory-pathway protein translocation.

    Evidence Literature review citing chaperone assays and Sec61 pathway analysis

    PMID:26167469

    Open questions at the time
    • No direct experiment on PF3D7_1318800 reported
    • PfSec63–PfHsp70-2 functional coupling not biochemically demonstrated
    • J-domain stimulation of BiP ATPase not measured
  4. 2021 Low

    Refining the substrate specificity question, PF3D7_1318800 was described as an auxiliary factor of specialized Sec61 channels dedicated to PEXEL-containing exported proteins, distinguishing them from canonical channels handling PNEPs.

    Evidence Review of published genetic and biochemical translocon-composition data

    PMID:34440567

    Open questions at the time
    • Review-level claim; no direct experiment on PF3D7_1318800
    • Physical co-association with plasmepsin V at these channels not shown for PF3D7_1318800 itself
    • Selectivity for PEXEL versus PNEP substrates not tested experimentally
  5. 2023 Low

    To move toward a druggable model, in silico docking modeled PF3D7_1318800 as a J-domain partner of PfHsp70-2 and used the complex for virtual screening, nominating compounds that engage the complex or its J domain.

    Evidence Molecular docking and molecular dynamics simulation (in silico)

    PMID:37621993

    Open questions at the time
    • Computational only; the PfHsp70-2–PfSec63 interaction was not biochemically validated
    • Compound binding and complex-stabilizing effects untested in cells or in vitro
    • No structural determination of PF3D7_1318800
  6. 2024 Low

    Cross-species extrapolation identified a P. knowlesi orthologue (PKNH_1419600, 82% identity) proposed to activate the lumenal PkHSP70 during ER translocation, extending the predicted Sec63–BiP relationship beyond P. falciparum.

    Evidence Comparative genomics and sequence identity analysis (bioinformatics)

    PMID:39596368

    Open questions at the time
    • No experiments performed in P. knowlesi
    • Orthologue function inferred solely from sequence identity
    • PkHSP70 activation by PKNH_1419600 not demonstrated

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether PF3D7_1318800 physically associates with PfSec61 and PfHsp70-2, whether its J domain stimulates BiP ATPase activity, and whether it is required for translocation of PEXEL-exported proteins all remain experimentally unaddressed.
  • No Co-IP, pulldown, or reciprocal interaction validation
  • No conditional knockdown/knockout to test translocation function
  • No structural or topology data for the protein

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
PfHsp70-2 (BiP)–PfSec63 J-domain complex (in silico model) [#2]Sec61/Sec62/Sec63 ER translocation complex (putative) [#0]Specialized PfSec61 translocation channel with plasmepsin V for PEXEL-protein export (putative) [#4]

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2007 Bioinformatics analysis identified a homologue of SEC63 (a component of the Sec translocation complex) in the P. falciparum genome, placing PF3D7_1318800 as a putative member of the Sec61αβγ/Sec62/Sec63 translocation machinery involved in co- and post-translational protein translocation into the ER. Bioinformatics/comparative genomics Archives of biochemistry and biophysics Low 17919451
2015 PF3D7_1318800 (referred to as PfSec63) was proposed to be a membrane-bound PfHSP40 co-chaperone that works together with the ER-resident PfHsp70-2 (BiP homologue) and the PfSec61 translocon complex to mediate protein secretion through the ER secretory pathway. Literature review citing in vitro chaperone assays and pathway analysis of Sec61 complex components Frontiers in molecular biosciences Low 26167469
2023 In silico molecular docking identified PF3D7_1318800 (PfSec63) as a J-domain protein partner of PfHsp70-2 within the ER, and the PfHsp70-2–PfSec63 complex was used as a target for virtual screening of the Pandemic Response Box drug repurposing library; compounds zoliflodacin and itraconazole were identified as potential stabilizers of this complex, while ezetimibe and a benzo-diazepinone bound preferentially to the J domain of PfSec63. Molecular docking and molecular dynamics simulation (in silico) Frontiers in molecular biosciences Low 37621993
2010 PF3D7_1318800 (annotated as PF13_0102, the P. falciparum Sec63 homologue) is a transmembrane ER HSP40 involved in translocation of signal-peptide-containing proteins into the ER; its expression is up-regulated in clinical isolate cluster 2 (active growth/glycolysis state), and interactome network analysis identified two hypothetical protein interactors (MAL8P1.153 and PFI1780w) as partners in the parasite chaperone network. Expression profiling of clinical isolates combined with cytoscape-based chaperone interactome network construction Malaria journal Low 20719001
2021 PF3D7_1318800 (Sec63) was described as an auxiliary protein associated with specialized Sec61 translocation channels in the P. falciparum ER that are used specifically for translocation of PEXEL-containing exported proteins (in contrast to canonical Sec61 channels used for PNEP proteins), with plasmepsin V co-associated at these specialized channels. Review of published genetic and biochemical data on Sec translocon composition Life (Basel, Switzerland) Low 34440567
2024 In P. knowlesi, PKNH_1419600 (82% sequence identity to PfSec63/PF3D7_1318800) is proposed to be the orthologous ER membrane-bound J-domain protein that activates the ER-lumenal PkHSP70 (PKNH_0715900, homologue of PfHSP70-2/BiP) in the context of protein translocation into the ER, consistent with the established human Sec63–BiP functional relationship. Comparative genomics and sequence identity analysis (bioinformatics) International journal of molecular sciences Low 39596368

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2007 Unraveling the components of protein translocation pathway in human malaria parasite Plasmodium falciparum. Archives of biochemistry and biophysics 25 17919451
2023 In silico identification of modulators of J domain protein-Hsp70 interactions in Plasmodium falciparum: a drug repurposing strategy against malaria. Frontiers in molecular biosciences 9 37621993
2024 Plasmodium falciparum heat shock proteins as antimalarial drug targets: An update. Cell stress & chaperones 0 38518861
2024 The J Domain Proteins of Plasmodium knowlesi, a Zoonotic Malaria Parasite of Humans. International journal of molecular sciences 0 39596368
2022 Plasmodium falciparum Molecular Chaperones: Guardians of the Malaria Parasite Proteome and Renovators of the Host Proteome. Frontiers in cell and developmental biology 0 35652103
2021 Unique Endomembrane Systems and Virulence in Pathogenic Protozoa. Life (Basel, Switzerland) 0 34440567
2020 Pan-active imidazolopiperazine antimalarials target the Plasmodium falciparum intracellular secretory pathway. Nature communications 0 32286267
2015 Plasmodial HSP70s are functionally adapted to the malaria parasite life cycle. Frontiers in molecular biosciences 0 26167469
2010 Chaperone expression profiles correlate with distinct physiological states of Plasmodium falciparum in malaria patients. Malaria journal 0 20719001