Affinage · Plasmodium

PGM1

PF3D7_1120100 · phosphoglycerate mutase, putative

Annotated
2026-09-08
9 papers in source corpus 5 papers cited in narrative 5 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PGM1 (PF3D7_1120100) is an essential phosphoglycerate mutase required for intraerythrocytic survival of Plasmodium falciparum (PMID:35150741). It functions as a tetramer: the residue W68 mediates oligomerization, and its mutation to alanine abolishes tetramer formation and drastically reduces catalytic activity in vitro, while the conserved residue K100 is likewise required for enzymatic activity (PMID:35150741). Consistent with an essential metabolic role, conditional knockdown impairs parasite growth and ectopic wild-type expression enhances growth, whereas the monomeric W68 mutant confers no growth advantage (PMID:35150741). PGM1 is subject to dual control by the acetyltransferase PfGCN5: PfGCN5 acetylates the catalytic K100 residue to increase PGM1 protein stability and pool size rather than to directly alter catalytic rate, and PfGCN5 also occupies the PGM1 promoter in a stage-specific manner such that its knockdown lowers PGM1 transcript levels (PMID:40567037). Beyond these established regulatory and structural features, PGM1 has been captured in redox-proteomic screens as a target of S-glutathionylation and as a substrate of cytosolic thioredoxin 1, though no PGM1-specific functional consequence of these modifications has been characterized in the available corpus (PMID:21595565, PMID:20307687).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2010 Low

    To place PGM1 within the parasite's redox network, it was asked whether the enzyme is a substrate of the thioredoxin reduction pathway.

    Evidence Trx-affinity chromatography using a cysteine-mutant (C33S) trap with LC-MS/MS identification

    PMID:20307687

    Open questions at the time
    • Single affinity pulldown/MS identification with no functional follow-up on PGM1 activity
    • Which cysteine residues are targeted is not defined
    • The physiological consequence of thioredoxin reduction of PGM1 is unknown
  2. 2011 Low

    Redox-proteomic screening asked whether PGM1 undergoes reversible thiol modification, testing whether it can form a mixed disulfide with glutathione.

    Evidence Enzymatic deglutathionylation with biotin-maleimide affinity purification and proteomic mass spectrometry

    PMID:21595565

    Open questions at the time
    • Proteome-wide identification without PGM1-specific functional validation
    • Effect of S-glutathionylation on catalytic activity or tetramerization not tested
    • Modified residues not mapped
  3. 2011 Low

    To determine whether the two P. falciparum PGMase-family proteins are functionally redundant, PGM1 was compared structurally and enzymatically against its paralog PfPGM2.

    Evidence Crystal structure of PfPGM2, sequence/structural comparison with PGM1, and in vitro enzymatic assays

    PMID:21689687

    Open questions at the time
    • Direct enzymatic characterization was performed on PfPGM2, not PGM1; PGM1 served only as a comparative reference
    • No structure of PGM1 itself was determined
    • The distinct catalytic conformation of PGM1 is inferred, not experimentally solved
  4. 2022 High

    The central question of PGM1's essentiality and the structural basis of its activity was resolved by linking tetramerization and specific catalytic residues to enzyme function and parasite growth.

    Evidence Site-directed mutagenesis (W68A, K100) with in vitro enzymatic assays, conditional knockdown, and ectopic overexpression growth complementation

    PMID:35150741

    Open questions at the time
    • Structure of the PGM1 tetramer not solved
    • Whether K100 contributes to catalysis directly or to substrate binding is not resolved
    • Metabolic flux consequences of knockdown not quantified
  5. 2025 High

    How PGM1 abundance is controlled was addressed by identifying PfGCN5 as a dual regulator acting at both the protein-stability and transcriptional levels.

    Evidence PfGCN5 knockdown with cycloheximide chase, ChIP for promoter occupancy, RT-qPCR, in vitro acetyltransferase assay, and K100 mutagenesis

    PMID:40567037

    Open questions at the time
    • Stoichiometry and dynamics of K100 acetylation in vivo not quantified
    • The deacetylase counteracting PfGCN5 on PGM1 is unidentified
    • How acetylation at the catalytic K100 stabilizes protein without altering activity is mechanistically unexplained

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown whether the redox modifications (S-glutathionylation, thioredoxin reduction) integrate with acetylation and tetramerization to coordinately regulate PGM1 function during the parasite life cycle.
  • No functional link established between redox modifications and PGM1 catalytic output
  • No structural model of the PGM1 tetramer
  • Cross-talk between transcriptional, acetylation, and redox control of PGM1 not tested

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 PfPGM1 (PF3D7_1120100) forms a tetramer that is critical for optimal enzymatic activity in vivo; single point mutation W68A abolishes tetramerization and drastically reduces catalytic activity in vitro, while mutation of the conserved residue K100 also leads to drastic reduction in enzymatic activity. Conditional knockdown demonstrated PfPGM1 is essential for intraerythrocytic parasite survival. Ectopic expression of wild-type PfPGM1 enhanced parasite growth, whereas the monomeric (W68) mutant form failed to provide growth advantage. Site-directed mutagenesis, in vitro enzymatic assay, conditional knockdown (loss-of-function), ectopic overexpression with parasite growth readout The Journal of biological chemistry High 35150741
2025 PfPGM1 (PF3D7_1120100) is post-translationally regulated by lysine acetylation: the catalytic residue K100 is acetylated by the essential histone acetyltransferase PfGCN5. Acetylation modulates PfPGM1 protein stability rather than directly altering catalytic activity (increasing the protein pool). Additionally, PfGCN5 occupies the PfPGM1 promoter in a stage-specific manner, and knockdown of PfGCN5 reduces PfPGM1 transcript levels, revealing dual regulation (post-translational protein stability and transcriptional control) of PfPGM1 by PfGCN5. Knockdown of PfGCN5 + cycloheximide chase (protein stability assay), ChIP (PfGCN5 promoter occupancy), RT-qPCR (transcript level), in vitro acetyltransferase assay, site-directed mutagenesis (K100) The FEBS journal High 40567037
2011 Phosphoglycerate mutase (PfPGM1/PF3D7_1120100) was identified as a target of protein S-glutathionylation in P. falciparum using enzymatic deglutathionylation, biotin-maleimide affinity purification, and proteomic analysis, indicating it can form a mixed disulfide with glutathione as a redox-sensitive post-translational modification. Enzymatic deglutathionylation, affinity purification (biotin-maleimide), proteomics/mass spectrometry Antioxidants & redox signaling Low 21595565
2010 Phosphoglycerate mutase (PF3D7_1120100) was captured as a target of cytosolic thioredoxin 1 (PfTrx-1) in P. falciparum using a cysteine-mutant Trx affinity chromatography approach, identifying it as a substrate in the thioredoxin reduction pathway. Trx-affinity chromatography (cysteine mutant C33S trap), LC-MS/MS Parasitology international Low 20307687
2011 Structural and enzymatic comparison established that PfPGM1 (PF3D7_1120100) and PfPGM2 (a paralog) have distinct catalytic conformations; PfPGM1 was used as a reference for sequence/structural comparison, while the characterized PfPGM2 acts primarily as a phosphatase with only residual mutase activity. The two P. falciparum PGMase-family proteins thus have functionally divergent enzymatic activities. Crystal structure determination (of PfPGM2), sequence and structural comparison with PfPGM1, in vitro enzymatic activity assay Molecular and biochemical parasitology Low 21689687

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 Protein S-glutathionylation in malaria parasites. Antioxidants & redox signaling 87 21595565
2011 Characterization of a new phosphatase from Plasmodium. Molecular and biochemical parasitology 19 21689687
2013 PfHPRT: a new biomarker candidate of acute Plasmodium falciparum infection. Journal of proteome research 14 23339668
2010 Target proteins of the cytosolic thioredoxin in Plasmodium falciparum. Parasitology international 12 20307687
2022 The tetrameric structure of Plasmodium falciparum phosphoglycerate mutase is critical for optimal enzymatic activity. The Journal of biological chemistry 6 35150741
2014 Proteomics analysis of antimalarial targets of Garcinia mangostana Linn. Asian Pacific journal of tropical biomedicine 4 25183269
2018 Virtual Screening, Molecular Dynamics and ADME-Tox Tools for Finding Potential Inhibitors of Phosphoglycerate Mutase 1 from Plasmodium falciparum. Current topics in medicinal chemistry 3 30370850
2025 Plasmodium falciparum acetyltransferase GCN5 acts as a dual regulator of essential glycolytic enzyme phosphoglycerate mutase. The FEBS journal 1 40567037
2026 Breaking glycolysis: allosteric hotspots for multi-target drug repurposing. Journal of computer-aided molecular design 0 42142286