| 2000 |
FP2A (falcipain-2) is the principal trophozoite cysteine protease of P. falciparum, responsible for at least 93% of trophozoite soluble cysteine protease activity; it is concentrated in food vacuoles, hydrolyzes both native hemoglobin and denatured globin optimally at acid pH in a reducing environment, and can initiate cleavage of native hemoglobin. |
Affinity chromatography purification of native enzyme; recombinant expression in E. coli with refolding; enzymatic assays against peptide substrates, native hemoglobin, and denatured globin; immunolocalization |
The Journal of biological chemistry |
High |
10887194
|
| 2004 |
Genetic disruption of the FP2A gene in P. falciparum causes markedly diminished trophozoite cysteine protease activity and swollen, hemoglobin-filled food vacuoles, confirming FP2A's specific role in hemoglobin hydrolysis during the trophozoite stage; knockout parasites showed increased sensitivity to cysteine and aspartic protease inhibitors, revealing cooperative action between cysteine and aspartic proteases in hemoglobin degradation. |
Gene disruption (knockout) by homologous recombination; morphological analysis; cysteine protease activity assay; drug sensitivity assays (E-64, leupeptin, pepstatin) |
Proceedings of the National Academy of Sciences of the United States of America |
High |
15070727
|
| 2006 |
Disruption of the FP2A gene in the 3D7 strain produced swollen hemoglobin-filled food vacuoles in trophozoites; FP2A knockout parasites were twice as sensitive to cysteine protease inhibitors and over 1000-fold more sensitive to an aspartic protease inhibitor compared to wild-type, further supporting FP2A's role in hemoglobin hydrolysis and the cooperative interplay between cysteine and aspartic proteases. |
Gene disruption in 3D7 strain; morphological analysis; drug sensitivity assays |
Molecular and biochemical parasitology |
High |
16890302
|
| 2005 |
FP2A possesses a unique 14-amino acid C-terminal beta-hairpin motif (FP2(arm)) that mediates binding to hemoglobin independent of the active site; deletion of 10 residues of this motif abolishes activity against hemoglobin and globin but not against peptide substrates, casein, or gelatin. This motif also mediates interaction with the prodomain inhibitor of FP2A. |
Site-directed mutagenesis (deletion mutant Delta10FP2A); enzymatic assays against peptide substrates, hemoglobin, globin, casein, gelatin; E-64-inhibited complex pulldown to assess hemoglobin binding; peptide competition assay |
Proceedings of the National Academy of Sciences of the United States of America |
High |
15964982
|
| 2006 |
Crystal structure of mature FP2A at 3.1 Å resolution reveals a dynamic beta-hairpin hemoglobin-binding motif (FP2(arm)), a flexible N-terminal alpha-helical extension, and a unique active-site cleft. Biochemical assays showed that mature FP2A can proteolytically process its own precursor in trans at neutral to weakly alkaline pH, that hemoglobin binding is strictly pH-dependent, and that FP2A preferentially binds methemoglobin over hemoglobin. |
X-ray crystallography (3.1 Å); biochemical processing assays; hemoglobin-binding assays under varying pH conditions |
The Journal of biological chemistry |
High |
16777845
|
| 2006 |
Crystal structure of FP2A in complex with the protease inhibitor cystatin at 2.9 Å reveals two unique structural motifs: FP2(nose), a short N-terminal segment required for folding without a prodomain, and FP2(arm), required for hemoglobinase activity. Mutagenesis of two Tyr within FP2(nose) and a conserved Glu outside it confirmed their functional roles in folding. FP2(arm) bears a negative charge cluster suggesting an exo-site for hemoglobin binding. |
X-ray crystallography (crystal structure with cystatin); site-directed mutagenesis; functional activity assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
16864794
|
| 2009 |
Crystal structure of FP2A at 2.9 Å bound to the covalent inhibitor E-64 reveals that relative shape and flexibility of the S2 pocket are influenced by discrete amino acid substitutions, explaining kinetic differences between FP2A and falcipain-3. This represents the first crystal structure of a plasmodial cysteine protease with a small molecule inhibitor. |
X-ray crystallography (2.9 Å, FP2A-E64 complex); structural comparison with falcipain-3-leupeptin complex |
Journal of medicinal chemistry |
High |
19128015
|
| 2002 |
FP2A folding does not require its prodomain; instead, a 17-amino acid N-terminal segment of the mature protease acts as a chaperone-like peptide required for correct folding. The prodomain functions as a potent, competitive, and reversible inhibitor of mature FP2A (Ki ~10^-10 M) rather than as a folding chaperone. |
Recombinant expression of multiple pro- and mature domain constructs in E. coli; refolding assays; in trans complementation with isolated peptide; kinetic inhibition assays (Ki determination) |
The Journal of biological chemistry |
High |
11827964
|
| 2005 |
FP2A is synthesized through the trophozoite stage, is localized to the food vacuole (confirmed by immunofluorescence and immunoelectron microscopy), is synthesized as a membrane-bound proform that is processed to a soluble mature form more quickly than falcipain-3, and its autocatalytic processing occurs in a specific cellular compartment before delivery to the food vacuole (lipophilic but not hydrophilic cysteine protease inhibitors block processing, while both block hemoglobinase activity). |
Metabolic labeling and immunoprecipitation; immunofluorescence microscopy; immunoelectron microscopy; subcellular fractionation; inhibitor studies with E-64, E-64d, leupeptin, brefeldin A |
Molecular and biochemical parasitology |
High |
15664655
|
| 2007 |
FP2A is trafficked to the food vacuole via a classical vesicle-mediated secretory pathway involving the endoplasmic reticulum and Golgi-like apparatus, carried in cytostomal vesicles; the N-terminal sequence (residues 1–120) is sufficient for food vacuole targeting. |
Transgenic parasites expressing falcipain-2-GFP chimeras; FRAP (photobleaching); confocal microscopy; anti-falcipain-2 antibody immunolocalization |
Molecular and biochemical parasitology |
Medium |
17698213
|
| 2007 |
FP2A requires a bipartite motif in its prodomain for food vacuole trafficking: both a 20-amino acid stretch of the lumenal portion and a 10-amino acid stretch of the cytoplasmic portion are required for efficient trafficking; mutants with altered trafficking are arrested at the plasma membrane. |
GFP chimeras with serial truncations, deletions, and point mutations in transgenic P. falciparum; fluorescence microscopy |
The Journal of biological chemistry |
Medium |
17565983
|
| 2001 |
Recombinant FP2A cleaves erythrocyte membrane skeletal proteins ankyrin and protein 4.1 in vitro. |
In vitro cleavage assay with recombinant FP2A against purified erythrocyte membrane proteins |
Molecular and biochemical parasitology |
Medium |
11463472
|
| 2006 |
FP2A is a target of falstatin, an endogenous P. falciparum cysteine protease inhibitor; recombinant falstatin potently and reversibly inhibits FP2A activity, and antibodies blocking falstatin's inhibitory activity against native and recombinant FP2A dose-dependently decreased erythrocyte invasion by merozoites. |
Recombinant expression of falstatin in E. coli; enzyme inhibition assays against FP2A; antibody blocking assays; erythrocyte invasion assays |
PLoS pathogens |
Medium |
17083274
|
| 2013 |
FP2A is a component of an ~200-kDa protein complex in the food vacuole required for hemoglobin degradation and hemozoin formation; in vitro, FP2A and heme detoxification protein associate with each other to efficiently convert hemoglobin to hemozoin. |
Co-immunoprecipitation followed by mass spectrometry; gel filtration co-elution; glycerol gradient co-sedimentation; in vitro protein interaction assays; in vitro hemoglobin-to-hemozoin conversion assay |
Proceedings of the National Academy of Sciences of the United States of America |
High |
23471987
|
| 2009 |
FP2A shows strong substrate preference for leucine at the P2 position when cleaving peptide substrates, and cleaves hemoglobin at multiple sites across alpha and beta globin chains without a highly ordered pattern, indicating a principal but non-sequential role in hemoglobin hydrolysis. |
Random P1–P4 amino acid substrate libraries (positional scanning); overlapping peptide hydrolysis with proteolysis-dependent 18O labeling; intact hemoglobin digestion with product identification by MS |
PloS one |
High |
19357776
|
| 2011 |
The C-terminal inhibitory domain of P. berghei ICP (PbICP-C) forms a 1:1 complex with FP2A, establishing FP2A as a target of ICP-class inhibitors (I42/chagasin-like family); the crystal structure at 2.6 Å reveals that ICP uses a distinct binding mode compared to other chagasin-like inhibitors. |
X-ray crystallography (2.6 Å, PbICP-C:FP2A complex) |
Structure (London, England : 1993) |
High |
21742259
|
| 2012 |
Auto-activation of FP2A requires specific salt bridges (Arg185–Glu221 and Glu210–Lys403) and hydrophobic interactions (Phe214, Trp449, Trp453) between its prodomain and mature domain; mutagenesis of these residues abolishes autoprocessing. |
Recombinant expression of wild-type and mutant FP2A in E. coli; circular dichroism; trans-activation assays; mutagenesis of salt bridge and hydrophobic residues |
PloS one |
Medium |
23077573
|
| 2015 |
Heme binds to FP2A with 1:1 stoichiometry and inhibits FP2A activity against both hemoglobin and peptide substrates through a noncompetitive-like mechanism (substrate inhibition induced by heme); a novel inducible heme-binding site adjacent to the catalytic site was identified by docking and molecular dynamics; inhibition requires both propionic and vinyl groups of the heme porphyrin, with minor contribution from iron. |
Enzyme kinetic assays; porphyrin analogue structure-activity relationship screen; docking and molecular dynamics simulation |
Archives of biochemistry and biophysics |
Medium |
25791019
|
| 2004 |
Site-directed mutagenesis of FP2A identified active-site catalytic triad residues C42, H174, and N204 as essential for catalysis; substitutions at C99 and C119 caused structural alterations with >97% reduction in enzyme activity; S149 is required for specific peptide substrate interactions. |
Site-directed mutagenesis (nine mutants); recombinant expression in E. coli; affinity purification; enzymatic activity assays |
Biochemical and biophysical research communications |
Medium |
15369788
|
| 2018 |
FP2A (PF3D7_1115700) is required for potent artemisinin activity; haplotypes bearing naturally occurring FP2A polymorphisms from Southeast Asia showed increased ring survival and significantly reduced FP2A enzymatic activity compared to wild-type, with haplotype group I showing the slowest protease kinetics and reduced parasite fitness. |
Full-length gene sequencing of 140 P. falciparum isolates; functional haplotype analysis; enzymatic activity assays; ring-stage survival assays |
The Journal of infectious diseases |
Medium |
29659945
|
| 2023 |
FP2A interacts with PTEX core components (including PTEX150) and this interaction is required for efficient trafficking of FP2A to the food vacuole; PTEX150 knockdown substantially perturbs hemoglobin digestion, suggesting FP2A is translocated into the parasitophorous vacuole via PTEX to reach the cytostome prior to food vacuole entry. |
Conditional knockdown of PTEX150; transgenic parasite lines with GFP fusions; co-immunoprecipitation; hemoglobin digestion assays |
PLoS pathogens |
Medium |
37523385
|
| 2019 |
Crystal structure of FP2A at 3.45 Å in complex with an (E)-chalcone small-molecule inhibitor reveals that the inhibitor binds to the rear of the substrate-binding cleft, identifying a novel small-molecule binding site distinct from the active site. |
X-ray crystallography (3.45 Å, FP2A-(E)-chalcone complex); structural comparison with previous FP2A complexes |
Malaria journal |
Medium |
31791339
|
| 2021 |
Crystal structure of FP2A from the drug-resistant P. falciparum 3D7 strain (with variants R12K, E14N, P100T, G102D in the mature domain) resolved at 3.5 Å (E-64 complex) and 3.4 Å (iodoacetamide complex) reveals two solvent-exposed pockets including one structurally homologous to the allosteric binding site of human cathepsin K, and shows strain-specific multiple binding modes for E-64. |
X-ray crystallography (3.5 Å and 3.4 Å with two inhibitors); structural analysis; docking and normal mode analysis |
Biochemical and biophysical research communications |
Medium |
34974303
|