Affinage · Plasmodium

PF3D7_1003500

40S ribosomal protein S20e, putative

Annotated
2026-09-08
4 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_1003500 (S20e) is established solely as a structural component of the small (40S) subunit of the Plasmodium falciparum 80S ribosome, resolved within high-resolution cryo-EM structures of the intact ribosome (PMID:24913268, PMID:26432834) and visualized in situ as part of natively translating ribosomes inside infected human erythrocytes (PMID:40825879). No enzymatic activity, specific binding partner, or functional role for S20e beyond its incorporation into the ribosome has been characterized in the available corpus; the studies that place S20e in the small subunit interrogate ribosome-level features—such as the emetine binding site at the small-subunit E-site that blocks mRNA/tRNA translocation (PMID:24913268) and drug-induced shifts in elongation-factor-bound states (PMID:40825879)—rather than S20e itself. Beyond its membership in the 40S subunit, S20e has not been individually functionally dissected in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2014 Medium

    Establishing the molecular composition of the P. falciparum small ribosomal subunit required a high-resolution structure; resolving S20e as a subunit component defined it as part of the parasite translation machinery and situated it near the emetine/E-site translocation region.

    Evidence Cryo-EM structure of the P. falciparum 80S ribosome-emetine complex at 3.2 A

    PMID:24913268

    Open questions at the time
    • S20e is placed structurally but not functionally interrogated
    • No test of whether S20e itself contributes to emetine binding or translocation
    • No binding partners or activity assigned to S20e
  2. 2015 Medium

    Confirming S20e as a bona fide component of the native ribosome (not a preparation artifact) required independent reconstructions from parasite-derived material, reinforcing its assignment to the small subunit.

    Evidence Five cryo-EM reconstructions of ribosomes purified from blood-stage schizonts with flexible-fitting atomic models

    PMID:26432834

    Open questions at the time
    • No functional role for S20e distinguished from bulk ribosome
    • No stage-specific or condition-specific role tested for S20e
    • Single lab
  3. 2025 Medium

    Whether S20e is part of ribosomes actively translating in the cellular context was addressed by in situ imaging, confirming its presence in native translating ribosomes and linking the ribosome to drug-responsive translational states.

    Evidence In situ cryo-electron tomography of translating ribosomes inside P. falciparum-infected erythrocytes with a Plasmodium-specific translation inhibitor

    PMID:40825879

    Open questions at the time
    • Drug-induced changes are ribosome-level, not attributed to S20e specifically
    • No S20e-specific perturbation or knockdown
    • No interaction partners beyond the ribosome assigned to S20e

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether S20e has any function beyond serving as a structural subunit—any regulatory, extra-ribosomal, or drug-target role—remains unaddressed.
  • No genetic perturbation of S20e reported
  • No S20e-specific binding partners or post-translational modifications characterized
  • No evidence of function outside the ribosome

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
P. falciparum 80S ribosome, small (40S) subunit

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 PF3D7_1003500 (S20e / 40S ribosomal protein S20e) was resolved as a component of the P. falciparum 80S ribosome small subunit in a cryo-EM structure at 3.2 Å resolution; the structure placed the small subunit E-site as the binding site for emetine, which blocks mRNA/tRNA translocation. Cryo-EM structure determination at 3.2 Å resolution of the P. falciparum 80S ribosome–emetine complex eLife Medium 24913268
2015 PF3D7_1003500 (S20e) was confirmed as a structural component of the P. falciparum 80S ribosome small subunit through five cryo-EM reconstructions of ribosomes purified from blood-stage schizonts at sub-nanometer resolution, with atomic models built by flexible fitting. Cryo-EM reconstructions (sub-nanometer resolution) with flexible-fitting atomic model building Nucleic acids research Medium 26432834
2025 PF3D7_1003500 (S20e) was visualized as part of the native P. falciparum 80S ribosome in eight high-resolution in situ cryo-electron tomography structures of actively translating ribosomes inside infected human erythrocytes; drug-induced perturbation with a Plasmodium-specific translation inhibitor revealed changes in elongation factor-bound ribosomal states and apparent upregulation of ribosome biogenesis. In situ cryo-electron tomography at high resolution within P. falciparum-infected erythrocytes; integrated structural biology approach Nature structural & molecular biology Medium 40825879

Source papers

Stage 0 corpus · 4 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. eLife 272 24913268
2015 Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic acids research 45 26432834
2025 Integrated structural biology of the native malarial translation machinery and its inhibition by an antimalarial drug. Nature structural & molecular biology 7 40825879
2025 Antimalarial drug artemisinin stabilizes PfRACK1 binding to the ribosome. Structure (London, England : 1993) 3 40480224