Affinage · Plasmodium

SPM1

PF3D7_0909500 · subpellicular microtubule protein 1, putative

Annotated
2026-09-08
14 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SPM1 (PF3D7_0909500) is a subpellicular microtubule-associated protein of Plasmodium that contributes to the structural reinforcement of the subpellicular microtubule (SPMT) cytoskeleton (PMID:36625655, PMID:36869034). In P. falciparum gametocytes, overexpressed PfSPM1 colocalizes with the microtubule marker TubulinTracker and with the SPMT protein PfSPM3 along the SPMTs, distributing more basally than PfSPM3 (PMID:36625655), and it is recovered as a high-confidence component of the PfSPM3 proxiome by proximity biotinylation, confirming its association with the SPMT network (PMID:41358875). In situ cryo-electron tomography of P. falciparum sporozoites showed that SPMTs are reinforced by an interrupted luminal helix built from TrxL1- and SPM1-like proteins; this luminal structure is present in the motile mosquito stages (ookinetes and sporozoites) but absent from merozoites and gametocytes, and SPM1-GFP is highly expressed in sporozoites (PMID:36869034). In the rodent parasite P. berghei, spm1 is a direct transcriptional target of the ookinete transcription factor AP2-O (PMID:26018192), and its deletion causes a partial (~57%) reduction in salivary gland sporozoite counts (PMID:37708854) but is otherwise dispensable for transmission through the mosquito (PMID:39908102). Beyond its role as a luminal SPMT-reinforcing protein, the precise molecular contribution of SPM1 to microtubule mechanics has not been resolved in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2015 Medium

    Establishing that spm1 is a defined transcriptional target of AP2-O placed SPM1 within the ookinete-stage gene expression program before its protein function was known.

    Evidence ChIP-seq mapping AP2-O binding to the spm1 upstream region in P. berghei ookinetes

    PMID:26018192

    Open questions at the time
    • Does not demonstrate that AP2-O binding drives functional SPM1 expression
    • No protein-level or localization data from this study
    • Regulation in other stages or species not addressed
  2. 2023 Medium

    Colocalization of PfSPM1 with tubulin and PfSPM3 first assigned SPM1 to the subpellicular microtubule cytoskeleton, defining it as an SPMT-associated protein.

    Evidence Fluorescence colocalization of overexpressed mCherry-PfSPM1 with TubulinTracker and PfSPM3-GFP in P. falciparum gametocytes

    PMID:36625655

    Open questions at the time
    • Relied on overexpressed tagged protein with cytosolic background
    • Does not resolve whether SPM1 binds microtubules directly or via other MAPs
    • Functional consequence of the SPMT localization untested
  3. 2023 High

    Cryo-ET revealed the structural role of SPM1 as part of an interrupted luminal helix reinforcing SPMTs specifically in motile mosquito stages, explaining a stage-specific microtubule specialization.

    Evidence In situ cryo-electron tomography with subvolume averaging and SPM1-GFP imaging in P. falciparum sporozoites

    PMID:36869034

    Open questions at the time
    • Exact stoichiometry and periodicity of SPM1 within the luminal helix not fully defined
    • Whether SPM1 loss abolishes the luminal helix not directly tested
    • Contribution of SPM1 versus TrxL1 to helix assembly unresolved
  4. 2023 Medium

    Genetic disruption in P. berghei tested whether SPM1 is functionally required, showing a partial defect in salivary gland sporozoite colonization rather than an essential role.

    Evidence Clonal gene knockout and salivary gland sporozoite counts plus barcode sequencing screen in P. berghei

    PMID:37708854

    Open questions at the time
    • Mechanism linking SPM1 loss to reduced salivary gland sporozoites unknown
    • Single lab, single method for the quantitative phenotype
    • Ultrastructural effect of knockout on SPMTs not examined
  5. 2025 Medium

    A dedicated transmission knockout confirmed that SPM1 is dispensable for the full mosquito-to-vertebrate transmission cycle, framing its role as modulatory rather than essential.

    Evidence Single gene deletion and mosquito transmission assays in P. berghei

    PMID:39908102

    Open questions at the time
    • Does not exclude subtle motility or fitness defects
    • No P. falciparum knockout to confirm dispensability in the human parasite
  6. 2025 Medium

    Proximity biotinylation independently validated the SPM1-SPMT network association by recovering SPM1 as a high-confidence PfSPM3 proxiome member in a physiologically tagged setting.

    Evidence BioID with PfSPM3-BirA*-GFP bait and mass spectrometry across three replicates in P. falciparum gametocytes

    PMID:41358875

    Open questions at the time
    • Proximity does not establish direct SPM1-SPM3 binding
    • Single lab and single bait
    • Gametocyte context, while SPMT luminal helix is absent from gametocytes

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SPM1 mechanically stabilizes or specializes the SPMT lumen and why its loss selectively impairs salivary gland invasion remain unresolved.
  • No structure-function dissection of the SPM1 microtubule-binding surface
  • No test of whether SPM1 deletion disrupts the interrupted luminal helix in vivo
  • Mechanistic basis for the salivary gland sporozoite defect unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Subpellicular microtubule interrupted luminal helix (with TrxL1-like proteins) [#1]

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 SPM1 (PF3D7_0909500) localizes to subpellicular microtubules (SPMTs) in P. falciparum gametocytes, as demonstrated by colocalization of overexpressed mCherry-tagged PfSPM1 with TubulinTracker and with PfSPM3-GFP; PfSPM1 showed a distribution similar to TubulinTracker along SPMTs with some cytosolic background, and its signal was distributed more basally compared to PfSPM3. Fluorescence microscopy colocalization of overexpressed mCherry-tagged PfSPM1 with TubulinTracker and GFP-tagged PfSPM3 in P. falciparum mBio Medium 36625655
2023 In P. falciparum sporozoites, cryo-electron tomography and subvolume averaging revealed that SPMTs are reinforced by an interrupted luminal helix (ILH) composed of TrxL1- and SPM1-like proteins. The ILH is present in the motile mosquito stages (ookinetes and sporozoites) but absent from merozoites and gametocytes. SPM1-GFP-expressing lines confirmed high expression in sporozoites. In situ cryo-electron tomography and subvolume averaging; SPM1-GFP live fluorescence imaging in sporozoites Nature communications High 36869034
2025 Single gene deletion of SPM1 in Plasmodium berghei showed it is dispensable for transmission from the vertebrate host to the mosquito and back, indicating SPM1 is not essential for transmission in the rodent malaria model. Single gene deletion (knockout) in P. berghei; mosquito transmission assays Proceedings of the National Academy of Sciences of the United States of America Medium 39908102
2023 Knockout of SPM1 in P. berghei (Δspm1) resulted in a statistically significant 57% reduction in salivary gland sporozoite counts compared to wild-type, suggesting a partial role in sporozoite infection of salivary glands, while the barcode sequencing screen found no strong transmission phenotype at the midgut stage. Conventional gene disruption vector; clonal knockout generation; sporozoite counts in salivary glands; barcode sequencing screen Cell host & microbe Medium 37708854
2025 SPM1 (PF3D7_0909500) was identified as a high-confidence component of the proxiome of PfSPM3 (a subpellicular MAP) in P. falciparum gametocytes by proximity-dependent biotinylation (BioID), confirming its association with the SPMT network. SPM1 was used as the significance threshold reference protein for defining high-confidence proxiome candidates. BioID proximity-dependent biotinylation with PfSPM3-BirA*-GFP as bait; streptavidin affinity purification; mass spectrometry; three independent biological replicates mBio Medium 41358875
2015 SPM1 is a transcriptional target of the AP2-O transcription factor in Plasmodium berghei ookinetes, as identified by chromatin immunoprecipitation-sequencing showing AP2-O binding to the upstream genomic region of the spm1 gene. Chromatin immunoprecipitation followed by sequencing (ChIP-seq) PLoS pathogens Medium 26018192

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2025 Microtubule inner proteins of Plasmodium are essential for transmission of malaria parasites. Proceedings of the National Academy of Sciences of the United States of America 7 39908102
2026 Microtubule inner proteins in apicomplexan parasites. Biochemical Society transactions 0 41626803
2025 Plasmodium berghei IMC1j interacts with δ-tubulin to orchestrate subpellicular microtubule organization in ookinetes. mBio 0 41117539
2025 An atlas of novel microtubule-associated proteins in the malaria parasite Plasmodium falciparum. mBio 0 41358875
2025 Luminal acetylation of microtubules is not essential for Plasmodium berghei and Toxoplasma gondii survival. Microbial cell (Graz, Austria) 0 41531934
2024 γ-tubulin complex controls the nucleation of tubulin-based structures in Apicomplexa. Molecular biology of the cell 0 39046777
2023 A Microtubule-Associated Protein Is Essential for Malaria Parasite Transmission. mBio 0 36625655
2023 Variable microtubule architecture in the malaria parasite. Nature communications 0 36869034
2023 Identification of genes required for Plasmodium gametocyte-to-sporozoite development in the mosquito vector. Cell host & microbe 0 37708854
2021 Interaction of Plasmodium falciparum apicortin with α- and β-tubulin is critical for parasite growth and survival. Scientific reports 0 33633135
2021 Plasmodium transcription repressor AP2-O3 regulates sex-specific identity of gene expression in female gametocytes. EMBO reports 0 33665945
2021 Systematic Analysis of Clemastine, a Candidate Apicomplexan Parasite-Selective Tubulin-Targeting Agent. International journal of molecular sciences 0 35008492
2019 Antigenicity and immune correlate assessment of seven Plasmodium falciparum antigens in a longitudinal infant cohort from northern Ghana. Scientific reports 0 31197225
2015 Genome-Wide Identification of the Target Genes of AP2-O, a Plasmodium AP2-Family Transcription Factor. PLoS pathogens 0 26018192