Affinage · Plasmodium

GMD

PF3D7_0813800 · GDP-mannose 4,6-dehydratase

Annotated
2026-09-08
3 papers in source corpus 2 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GMD (PF3D7_0813800) is a cytoplasmic GDP-mannose 4,6-dehydratase that catalyzes the first committed step of de novo GDP-fucose biosynthesis in Plasmodium falciparum, converting GDP-mannose toward GDP-fucose as demonstrated by in vitro assay of the recombinant enzyme (PMID:23615908). Epitope-tagged GMD localizes to the parasite cytoplasm during the intraerythrocytic developmental cycle (PMID:23615908). Genetic disruption of GMD completely abolishes labeling by the fucose-binding lectin UEA-I, establishing that GMD is required for production of fucose-containing glycoconjugates; however, GDP-fucose remains detectable in the null mutant, indicating an alternative, non-GMD route sustains residual GDP-fucose pools (PMID:27849032). GMD is dispensable for asexual blood-stage development, as the null mutant shows normal growth and invasion in culture (PMID:27849032). Beyond these findings, no further mechanistic detail — including structural basis, regulation, or downstream fucosylation targets — has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2013 Medium

    Establishing whether P. falciparum encodes a functional entry enzyme for de novo GDP-fucose synthesis, this work showed the recombinant protein is catalytically active on GDP-mannose.

    Evidence In vitro enzymatic assay of recombinant P. falciparum GMD

    PMID:23615908

    Open questions at the time
    • Kinetic parameters and structural basis of catalysis not determined
    • Activity shown in vitro only, not linked to in vivo flux at this stage
    • Single lab, single method
  2. 2013 Medium

    To place the enzyme in a subcellular context, tagging showed GMD resides in the parasite cytoplasm during intraerythrocytic development.

    Evidence Fluorescence microscopy of epitope-tagged GMD in transgenic 3D7 parasites

    PMID:23615908

    Open questions at the time
    • Localization from a single tagging approach without orthogonal validation
    • Does not address whether localization changes across stages or is complexed with partners
  3. 2016 High

    To test GMD's cellular role, knockout demonstrated it is required for fucosylated glycoconjugates yet revealed a GMD-independent source of residual GDP-fucose.

    Evidence PfGMD null mutant with UEA-I lectin labeling and LC-MS/MS quantification of GDP-fucose

    PMID:27849032

    Open questions at the time
    • Identity of the alternative GDP-fucose-generating mechanism not defined
    • Fucosylated substrate glycoconjugates not molecularly identified
  4. 2016 Medium

    To assess essentiality, the null mutant showed normal asexual growth and invasion, establishing the de novo GDP-fucose pathway is dispensable for blood-stage development in culture.

    Evidence Growth and invasion assays of the PfGMD null mutant in culture

    PMID:27849032

    Open questions at the time
    • Does not address requirement in sexual/mosquito or liver stages
    • In vitro culture only; in vivo relevance untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular identity of the alternative GDP-fucose source and the biological function of GMD-dependent fucosylation in the parasite remain unknown.
  • Salvage or alternative enzymatic route sustaining residual GDP-fucose unidentified
  • Downstream fucosylated targets and their functional consequences uncharacterized
  • Role, if any, in non-blood life-cycle stages untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification
No controlled-vocabulary terms were assigned to this entry.

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 P. falciparum GMD (PF3D7_0813800) is enzymatically active in vitro, catalyzing the conversion of GDP-mannose toward GDP-fucose as part of the de novo GDP-fucose biosynthesis pathway. In vitro enzymatic assay of recombinant P. falciparum GMD The Journal of biological chemistry Medium 23615908
2013 Epitope-tagged P. falciparum GMD (PF3D7_0813800) localizes to the cytoplasm of P. falciparum during the intraerythrocytic developmental cycle. Fluorescence microscopy of epitope-tagged GMD expressed in transgenic 3D7 parasites The Journal of biological chemistry Medium 23615908
2016 Knockout of P. falciparum GMD (PF3D7_0813800) completely abrogates labeling by the fucose-binding lectin UEA-I, confirming GMD is required for the production of fucose-containing glycoconjugates recognized by UEA-I. However, GDP-fucose is still detectable in the null mutant, indicating an alternative (non-GMD) mechanism for maintaining GDP-fucose pools exists in the parasite. Generation of PfGMD null mutant by gene disruption; UEA-I lectin labeling; LC-MS/MS quantification of GDP-fucose in mutant parasites Scientific reports High 27849032
2016 P. falciparum GMD (PF3D7_0813800) null mutant exhibits normal asexual blood-stage growth and invasion rates, demonstrating that the GDP-fucose de novo biosynthetic pathway is not essential for intraerythrocytic development in culture. PfGMD null mutant growth and invasion assays in culture Scientific reports Medium 27849032

Source papers

Stage 0 corpus · 3 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Biosynthesis of GDP-fucose and other sugar nucleotides in the blood stages of Plasmodium falciparum. The Journal of biological chemistry 36 23615908
2016 The disruption of GDP-fucose de novo biosynthesis suggests the presence of a novel fucose-containing glycoconjugate in Plasmodium asexual blood stages. Scientific reports 13 27849032
2015 Sugar activation and glycosylation in Plasmodium. Malaria journal 0 26520586