Affinage · Plasmodium

PF3D7_0711500

regulator of chromosome condensation, putative

Audit flag: identity unverified
Annotated
2026-09-08
2 papers in source corpus 2 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0711500 is a nuclear protein of Plasmodium falciparum, identified by nuclear-fraction proteomics and confirmed with tagged transgenic lines (PMID:23181666). Named PfRCC-PIP, it functions as a dual anchoring scaffold: it directly binds the parasite Protein Phosphatase type-1 (PfPP1) both in vitro and in the parasite, and the region containing its RCC1 motifs also engages the parasite kinase CDPK7, positioning it to bridge a phosphatase and a kinase (PMID:30429842). Attempted knockout yielded no viable parasites, consistent with a role essential for asexual survival (PMID:30429842). Beyond these interaction and localization findings, the downstream substrates and the biological consequence of the PfPP1/CDPK7 anchoring have not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2012 Medium

    Whether PF3D7_0711500 resides in a specific subcellular compartment was unknown; establishing nuclear localization provided the first functional context for this putative RCC1-motif protein.

    Evidence High-accuracy mass spectrometry of P. falciparum nuclear fractions with transgenic tagged-line validation

    PMID:23181666

    Open questions at the time
    • Functional consequence of nuclear localization not tested for this protein
    • No cell-cycle or chromatin association demonstrated
    • Interaction partners unidentified at this stage
  2. 2018 Medium

    It was unknown what molecular partners PF3D7_0711500 engaged; direct binding to PfPP1 and to CDPK7 via its RCC1-motif region established it as a dual kinase/phosphatase anchoring scaffold (PfRCC-PIP).

    Evidence In vitro binding assay, co-immunoprecipitation from parasite lysate, and Xenopus oocyte PP1 regulatory assay

    PMID:30429842

    Open questions at the time
    • Substrates dephosphorylated/phosphorylated within the complex not identified
    • Biological process coordinated by the anchoring not defined
    • Structural basis of RCC1-motif binding to CDPK7 not resolved
  3. 2018 Low

    Whether the gene is required for parasite growth was untested; failure to recover knockout parasites indicated it is likely essential for survival.

    Evidence Reverse genetics / attempted gene knockout in P. falciparum

    PMID:30429842

    Open questions at the time
    • Single failed-KO approach without a conditional system to rigorously confirm essentiality
    • Stage-specific requirement not defined
    • No phenotype from controlled depletion

Open questions

Synthesis pass · forward-looking unresolved questions
  • The downstream substrates and the cellular process coordinated by the PfPP1/CDPK7 anchoring function of PF3D7_0711500 remain unknown.
  • No substrate of the anchored phosphatase/kinase identified
  • No conditional-depletion phenotype linking the scaffold to a specific pathway
  • No structural model of the complex

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
PfRCC-PIP–PfPP1 complex in the parasite [#1]

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2012 PF3D7_0711500 (a putative regulator of chromosome condensation) was experimentally identified as a nuclear protein in P. falciparum by organellar proteomics and confirmed by transgenic cell line validation, establishing its nuclear localization. High-accuracy mass spectrometry of nuclear fractions combined with experimental validation using transgenic cell lines expressing tagged protein Genome biology Medium 23181666
2018 PF3D7_0711500 (named PfRCC-PIP) directly interacts with P. falciparum Protein Phosphatase type-1 (PfPP1) in vitro and in complex in the parasite; the protein region containing RCC1 motifs also interacts with the parasite kinase CDPK7, establishing PfRCC-PIP as both a phosphatase- and kinase-anchoring protein. In vitro binding assay (direct interaction with PfPP1), co-immunoprecipitation from parasite lysate, Xenopus oocyte functional assay (PP1 regulatory effect), and reverse genetics (attempted knockout — no viable parasites obtained) Frontiers in microbiology Medium 30429842
2018 Reverse genetic studies (attempted knockout) of PfRCC-PIP (PF3D7_0711500) failed to yield viable parasites, suggesting the gene is essential for P. falciparum survival. Reverse genetics / attempted gene knockout Frontiers in microbiology Low 30429842

Source papers

Stage 0 corpus · 2 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Genome biology 119 23181666
2018 Characterization of a Protein Phosphatase Type-1 and a Kinase Anchoring Protein in Plasmodium falciparum. Frontiers in microbiology 11 30429842