Affinage · Plasmodium

PF3D7_0627700

transportin

Annotated
2026-09-08
2 papers in source corpus 2 papers cited in narrative 2 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0627700 encodes a putative Plasmodium falciparum transportin, a 1,136 amino acid protein whose sequence contains conserved Ran-GTP and M9 nuclear localization signal binding domains, consistent with a role in the nuclear import of M9-bearing cargo proteins; Southern blot established it as a single-copy gene (PMID:12049453). Beyond this sequence-level and single-copy characterization, the direct functional biology of PF3D7_0627700 has not been characterized in the available corpus: no in vitro import assay, mutagenesis, or cargo identification has been reported for the P. falciparum protein. In the related parasite P. berghei, a transportin was identified as a binding partner of the nuclear poly(A) binding protein NAB2 at the nuclear periphery by IP-MS, placing a transportin within nuclear transport processes in malaria parasites (PMID:34604117).

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2002 Medium

    Establishing whether malaria parasites encode a dedicated nuclear import receptor addressed how M9-bearing cargo might reach the parasite nucleus; cloning revealed a single-copy gene with the diagnostic Ran-GTP and M9-NLS binding domains.

    Evidence cDNA cloning, amino acid sequence/domain analysis, and Southern blot in P. falciparum

    PMID:12049453

    Open questions at the time
    • No in vitro import assay demonstrating M9-cargo binding or Ran-GTP-dependent release
    • No mutagenesis confirming domain function
    • No cargo protein identified for the P. falciparum transportin
  2. 2021 Low

    To identify physiological partners of a malaria transportin, IP-MS in P. berghei placed a transportin in association with the RNA-binding protein NAB2 at the nuclear periphery, linking transportin to nuclear transport/RNA-associated processes.

    Evidence Immunoprecipitation coupled to mass spectrometry with live-cell fluorescence imaging in P. berghei

    PMID:34604117

    Open questions at the time
    • Single Co-IP/MS without reciprocal pulldown or functional validation of the transportin–NAB2 interaction
    • Shown in P. berghei, not directly in P. falciparum PF3D7_0627700
    • Functional consequence of the interaction (cargo import, RNA handling) not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether PF3D7_0627700 functions as a bona fide nuclear import receptor in P. falciparum, what cargo it transports, and whether the NAB2 interaction seen in P. berghei applies to the P. falciparum protein remain unresolved.
  • No direct import or Ran-GTP release assay for PF3D7_0627700
  • No cargo repertoire defined
  • No genetic knockout/knockdown phenotype reported for this gene

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2002 P. falciparum transportin (PF3D7_0627700) was cloned and found to encode a 1,136 amino acid protein with conserved Ran-GTP and M9 nuclear localization signal binding domains, indicating it mediates nuclear import of M9-bearing cargo proteins; Southern blot showed it is a single-copy gene in the malaria genome. cDNA cloning, amino acid sequence analysis, Southern blot Parasitology research Medium 12049453
2021 In P. berghei, NAB2 (nuclear poly(A) binding protein 2) interacts with transportin as shown by immunoprecipitation coupled to mass spectrometry (IP-MS), placing transportin as a binding partner of NAB2 at the nuclear periphery. Immunoprecipitation coupled to mass spectrometry (IP-MS); live-cell fluorescence imaging Frontiers in cellular and infection microbiology Low 34604117

Source papers

Stage 0 corpus · 2 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 Roles and Cellular Localization of GBP2 and NAB2 During the Blood Stage of Malaria Parasites. Frontiers in cellular and infection microbiology 6 34604117
2002 Molecular cloning and characterization of Plasmodium falciparum transportin. Parasitology research 2 12049453