Affinage · Plasmodium

HK

PF3D7_0624000 · hexokinase

Annotated
2026-09-08
21 papers in source corpus 15 papers cited in narrative 15 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0624000 (HK) encodes the P. falciparum hexokinase, a single-copy, single-exon gene on chromosome 8 that catalyzes the ATP-dependent phosphorylation of glucose to glucose-6-phosphate, the committed first step of parasite glycolysis, and is expressed in asexual blood stages (PMID:1475005). The parasite enzyme is kinetically distinct from the host erythrocyte hexokinase, with a substantially higher Km for glucose (431 vs 98 µM) and only ~26% amino acid identity to human hexokinase I, and its activity is markedly elevated in infected relative to uninfected erythrocytes (PMID:3316204, PMID:1475005). Beyond feeding glycolysis, HK-derived glucose-6-phosphate supplies the pentose shunt to regenerate NADPH for glutathione (GSSG) reduction, with GSSG reduction rate proportional to HK activity in normal but not G6PD-deficient infected cells (PMID:3316204). HK is cytosolic, and metabolic-flux comparisons in transgenic parasites establish that glucose transport by PfHT, not HK activity, is the rate-limiting step for glucose entry into glycolysis (PMID:23954294). The enzyme is redox-regulated: it is a target of cytosolic thioredoxin-1, and S-glutathionylation and S-nitrosation inhibit its activity (PMID:20307687, PMID:37628920). Structurally, the first PfHK crystal structure revealed a Plasmodium-specific active-site insertion implicated in ATP binding and inter-monomer communication (PMID:37628920), and cryo-EM of the P. vivax ortholog showed a distinctive tetrameric architecture adopting open and closed states (PMID:32431829). These species-specific kinetic, structural, and regulatory features underpin sustained interest in HK as an antiplasmodial drug target, validated by inhibition with glucose analogs, isobenzothiazolinones, and iso-mukaadial acetate binding (PMID:18713952, PMID:23716053, PMID:39827161).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 1957 Medium

    Establishing that infected erythrocytes contain elevated hexokinase activity addressed whether the parasite contributes its own glucose-phosphorylating capacity to explain increased glucose consumption.

    Evidence Enzyme inhibition assays on P. berghei-infected rodent hemolysates compared with yeast hexokinase

    PMID:13413145

    Open questions at the time
    • Did not distinguish parasite from host enzyme molecularly
    • Rodent-model finding, not P. falciparum
  2. 1987 Medium

    Demonstrating distinct kinetics and coupling to GSSG reduction answered whether the parasite enzyme is biochemically separable from the host and what downstream role its product serves.

    Evidence Enzyme kinetics on parasite lysates plus GSSG reduction assays, including G6PD-deficient comparison, in P. falciparum

    PMID:3058230 PMID:3316204

    Open questions at the time
    • Performed on lysates, not purified enzyme
    • Did not define the gene or protein sequence
  3. 1992 High

    Cloning the single-copy gene and confirming it by antibody inhibition established the molecular identity of the parasite-encoded hexokinase and its divergence from the human enzyme.

    Evidence cDNA/genomic cloning, sequence analysis, Western blotting, and antibody inhibition of enzyme activity in P. falciparum

    PMID:1475005

    Open questions at the time
    • No structural or catalytic-residue detail
    • Localization not definitively resolved
  4. 2010 Low

    Capturing HK as a thioredoxin-1 target raised the possibility that the glycolytic enzyme is subject to redox regulation.

    Evidence Trx-affinity chromatography with a C33S cysteine trap and LC-MS identification in P. falciparum

    PMID:20307687

    Open questions at the time
    • Single pulldown without HK-specific functional follow-up
    • Physiological redox effect not demonstrated in this study
  5. 2013 High

    Transgenic overexpression experiments resolved HK's localization and its position in the glycolytic hierarchy, showing transport rather than phosphorylation limits glucose entry.

    Evidence PfHK-GFP and native overexpression lines with fluorescence localization, [14C]2-DG flux assays, and PfHT comparison in P. falciparum 3D7

    PMID:23716053 PMID:23954294

    Open questions at the time
    • Does not address regulation of HK under nutrient stress
    • Inhibitor mechanism of action on the enzyme not structurally defined
  6. 2020 High

    Cryo-EM of the P. vivax ortholog answered the quaternary organization question, revealing a tetramer with open/closed states unlike human hexokinases.

    Evidence ~3 Å cryo-EM structures resolving two conformational states of P. vivax HK

    PMID:32431829

    Open questions at the time
    • Structure is of the vivax ortholog, not PF3D7_0624000
    • Functional consequence of the conformational states not defined
  7. 2023 High

    The first PfHK crystal structure plus oxidative-modification assays connected a Plasmodium-specific active-site insertion to ATP binding/inter-monomer communication and confirmed inhibitory redox PTMs.

    Evidence X-ray crystallography with enzyme activity assays after S-glutathionylation and S-nitrosation in P. falciparum

    PMID:37628920

    Open questions at the time
    • In vivo relevance of the oxPTMs during infection not established
    • Insertion's role in ATP binding inferred structurally, not mutationally tested
  8. 2025 Medium

    Direct binding measurement of a candidate inhibitor advanced HK's validation as a druggable target.

    Evidence Recombinant PfHK microscale thermophoresis, FTIR, and docking with iso-mukaadial acetate versus betulinic acid in P. falciparum NF54

    PMID:39827161

    Open questions at the time
    • No co-crystal defining the binding site
    • Enzyme inhibition and cellular antiplasmodial mechanism for IMA not established here

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether HK is genetically essential in P. falciparum and how its redox regulation operates dynamically during intraerythrocytic development remain unresolved.
  • No conditional knockout/knockdown phenotype in the corpus
  • Physiological triggers and reversibility of S-glutathionylation/S-nitrosation in vivo undefined
  • No PfHK inhibitor co-structure to guide selective drug design

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Homotetramer (open/closed states shown for the P. vivax ortholog by cryo-EM) [#12]

Evidence

Reading pass · 15 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1987 P. falciparum HK (PfHK) has distinct kinetic properties from the human erythrocyte enzyme: Km for glucose is 431 µM (vs. 98 µM for the erythrocyte enzyme), while Km for ATP and Vmax for both glucose and ATP are similar. PfHK activity is ~25-fold higher in infected erythrocytes than in control uninfected erythrocytes. The rate of GSSG reduction in infected erythrocyte lysates was proportional to hexokinase activity, establishing that PfHK-driven glucose-6-phosphate production feeds the pentose shunt to generate NADPH for glutathione reduction. Enzyme kinetics assays on parasite lysates; GSSG reduction assays correlated with parasitemia and hexokinase activity; comparison with G6PD-deficient infected red cell lysates The Journal of biological chemistry Medium 3316204
1988 Hexokinase activity is extremely elevated in P. falciparum-infected erythrocytes compared to uninfected red cells, and an electrophoretically distinct band of hexokinase activity is present, indicating parasite-encoded HK distinct from the host enzyme. Enzyme activity assays and electrophoretic analysis of glycolytic enzymes in infected vs. uninfected erythrocytes and isolated parasites Blood Medium 3058230
1992 PfHK is encoded by a single-copy gene on chromosome 8, translated from a single 1.5-kb exon within a 3-kb mRNA during asexual stages, and the protein has ~26% amino acid identity to human hexokinase I. Polyclonal antibodies against recombinant PfHK partially inhibited hexokinase activity in a P. falciparum lysate, confirming the cloned gene encodes the parasite hexokinase. cDNA/genomic DNA cloning, sequence analysis, Western blotting with poly- and monoclonal antibodies, antibody inhibition of enzyme activity Molecular and biochemical parasitology High 1475005
1994 PfHK expression and cellular localization were characterized during blood-stage development of P. falciparum. Not fully specified in available abstract (cellular localization study) Molecular and biochemical parasitology Low 8183319
1957 Hexokinase activity in hemolysates of P. berghei-infected mouse/rat erythrocytes is much higher than in normal erythrocytes, confirming the presence of a parasite hexokinase. Several antimalarial compounds (but not proguanil itself; its metabolite 10,580 was effective) inhibit P. berghei hexokinase in a manner similar to yeast hexokinase. The inhibition by mepacrine was reduced when ATP concentration was raised, while inhibition by compound 10,732 was independent of ATP concentration. Enzyme inhibition assays on hemolysates of P. berghei-infected rodent erythrocytes; comparison with yeast hexokinase British journal of pharmacology and chemotherapy Medium 13413145
1979 Parasite-specific hexokinase activity was demonstrated in P. berghei parasites isolated from infected mouse erythrocytes, providing an explanation for increased glucose consumption in infected cells. Enzyme assays on parasites isolated by hemolysin lysis; serology to confirm purity The Journal of parasitology Low 376819
1990 In P. berghei, hexokinase was partially purified from isolated parasites and kinetically characterized; its kinetic properties differ significantly from erythrocyte hexokinase, and it is less efficiently inhibited. The enzyme is present in the cytosolic fraction of the isolated parasite. Partial purification, enzyme kinetics, subcellular fractionation Biomedica biochimica acta Medium 2143651
1997 P. berghei hexokinase was purified from isolated parasites; its activity is 35-fold higher than in normal mouse erythrocytes and 5-fold higher than in P. berghei-infected erythrocytes. The enzyme has a subunit molecular weight of ~47 kDa and Km for ATP of 2 mM. Maximal activity is present in the cytosolic fraction. Purification (Sephadex G-200), SDS-PAGE, enzyme kinetics, subcellular fractionation Acta veterinaria Hungarica Medium 9270135
2008 2-fluoro-2-deoxy-D-glucose (2-FG) and 2-deoxy-D-glucose (2-DG) inhibit glucose phosphorylation by PfHK; a trend was observed between antiplasmodial activity of glucose analogs and their ability to inhibit hexokinase-mediated glucose phosphorylation. This validates PfHK and early glycolytic steps as antiplasmodial drug targets. Hexokinase inhibition assays with glucose analogs; glucose accumulation assays in intraerythrocytic parasites; correlation with antiplasmodial activity The Journal of pharmacology and experimental therapeutics Medium 18713952
2010 PfHK was captured as a target protein of cytosolic thioredoxin-1 (PfTrx-1) using a cysteine mutant (C33S) Trx-affinity chromatography approach, identifying PfHK as a potential redox-regulated glycolytic enzyme. Trx-affinity chromatography with a cysteine mutant (mixed disulfide trapping), LC-MS protein identification Parasitology international Low 20307687
2013 Transgenic P. falciparum overexpressing PfHK-GFP demonstrated that PfHK is cytosolic (contradicting previous reports). Overexpression of PfHK reduced toxicity of 2-deoxy-D-glucose ~2-fold. However, overexpression of PfHK did not increase the rate of phospho-[14C]2-DG accumulation, whereas overexpression of the glucose transporter PfHT did, establishing that glucose transport (PfHT), not PfHK activity, is the rate-limiting step for glucose entry into glycolysis. Transgenic parasite lines expressing PfHK-GFP or overexpressing native PfHK; [14C]2-DG phosphorylation assays; fluorescence microscopy for localization; parasite growth assays FEBS letters High 23954294
2013 PfHK (55.3 kDa) is inhibited by its reaction products (product inhibition). Isobenzothiazolinone compounds inhibit PfHK with IC50s <1 µM; inhibition was reversible by dilution but not by a reducing agent, indicating the mechanism does not involve covalent modification. Several of these inhibitors also inhibit P. falciparum growth in vitro. In vitro enzyme inhibition assays; reversibility tested by dilution and reducing agent treatment; parasite growth inhibition assays Antimicrobial agents and chemotherapy Medium 23716053
2020 Cryo-EM structures of Plasmodium vivax HK (PvHK) at ~3 Å resolution revealed a unique tetrameric organization (~220 kDa) that can exist in open or closed quaternary conformational states, distinct from human hexokinases. The active site of PvHK resembles that of mammalian counterparts despite the unique quaternary architecture. Cryo-EM structural determination at ~3 Å resolution; two conformational states resolved IUCrJ High 32431829
2023 The first crystal structure of P. falciparum HK (PfHK) was determined, revealing a Plasmodium-specific insertion that lines the active site and is proposed to play a role in ATP binding and to affect the tetrameric interface (suggesting inter-monomer communication). S-glutathionylation and S-nitrosation (oxidative post-translational modifications) of PfHK were confirmed to have an inhibitory effect on enzymatic activity. X-ray crystallography (first 3D structure of PfHK); enzymatic activity assays after S-glutathionylation and S-nitrosation treatment; structural analysis of the Plasmodium-specific insertion International journal of molecular sciences High 37628920
2025 Iso-mukaadial acetate (IMA) binds to recombinant PfHK with a KD of ~0.397 µM as measured by microscale thermophoresis; betulinic acid (BA) showed no detectable interaction with PfHK under the same conditions. FTIR confirmed compound-induced changes in PfHK secondary structure for IMA. Recombinant PfHK expression and purification; microscale thermophoresis (MST) binding assays; FTIR spectroscopy; molecular docking BMC chemistry Medium 39827161

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1988 The enzymes of the glycolytic pathway in erythrocytes infected with Plasmodium falciparum malaria parasites. Blood 98 3058230
1990 Plasmodium falciparum carbohydrate metabolism: a connection between host cell and parasite. Blood cells 95 2257322
1987 Malarial parasite hexokinase and hexokinase-dependent glutathione reduction in the Plasmodium falciparum-infected human erythrocyte. The Journal of biological chemistry 50 3316204
2008 The inhibitory effect of 2-halo derivatives of D-glucose on glycolysis and on the proliferation of the human malaria parasite Plasmodium falciparum. The Journal of pharmacology and experimental therapeutics 44 18713952
1992 Molecular analysis of Plasmodium falciparum hexokinase. Molecular and biochemical parasitology 37 1475005
2013 Interrogating a hexokinase-selected small-molecule library for inhibitors of Plasmodium falciparum hexokinase. Antimicrobial agents and chemotherapy 36 23716053
2014 Exploiting unique structural and functional properties of malarial glycolytic enzymes for antimalarial drug development. Malaria research and treatment 26 25580350
1957 The inhibitory action of some antimalarial drugs and related compounds on the hexokinase of yeast and of Plasmodium berghei. British journal of pharmacology and chemotherapy 19 13413145
2013 Studies with the Plasmodium falciparum hexokinase reveal that PfHT limits the rate of glucose entry into glycolysis. FEBS letters 17 23954294
2016 Identification of Novel Plasmodium falciparum Hexokinase Inhibitors with Antiparasitic Activity. Antimicrobial agents and chemotherapy 13 27458230
2010 Target proteins of the cytosolic thioredoxin in Plasmodium falciparum. Parasitology international 12 20307687
1990 Regulation of the energy metabolism of Plasmodium berghei. Biomedica biochimica acta 11 2143651
1994 Expression and cellular localisation of hexokinase during the bloodstage development of Plasmodium falciparum. Molecular and biochemical parasitology 9 8183319
2020 Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures. IUCrJ 7 32431829
2025 Assessing the efficacy of iso-mukaadial acetate and betulinic acid against selected Plasmodium falciparum glycolytic pathway proteins: in silico and in vitro studies. BMC chemistry 5 39827161
2023 Structural Analysis of Plasmodium falciparum Hexokinase Provides Novel Information about Catalysis Due to a Plasmodium-Specific Insertion. International journal of molecular sciences 4 37628920
1997 Purification and characterisation of the hexokinase of Plasmodium berghei, a murine malaria parasite. Acta veterinaria Hungarica 3 9270135
1979 Isolation of Plasmodium berghei by hemolysin lysis of infected erythrocytes and evidence for a parasite hexokinase. The Journal of parasitology 3 376819
2026 Systematic identification of species-specific allosteric sites in bacterial glycolytic enzymes: Hexokinase, phosphoglucose isomerase, phosphoglycerate kinase, and enolase. Biochimica et biophysica acta. Proteins and proteomics 0 42628823
2025 The impact of Iso-mukaadial acetate on Plasmodium falciparum transcriptional gene regulation. Scientific reports 0 41309744
1992 Alterations in host regulatory glycolytic enzymes during pathogenesis of primate malaria and following chloroquine therapy. International journal for parasitology 0 1534081