Affinage · Plasmodium

OAT

PF3D7_0608800 · ornithine aminotransferase

Annotated
2026-09-07
5 papers in source corpus 5 papers cited in narrative 5 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0608800 (OAT) is a pyridoxal-phosphate-dependent aminotransferase of Plasmodium falciparum that catalyzes the reversible transamination of ornithine or N-acetylornithine with alpha-ketoglutarate, and of glutamate-5-semialdehyde with glutamate and alanine, placing it within ornithine and glutamate interconversion (PMID:11704268). The enzyme shows narrow substrate specificity and is inhibited by the ornithine analogue canaline (Ki ~492 nM); isotope-tracing shows that the OAT-mediated biosynthetic route from glutamine to ornithine is quantitatively minor in the parasite (PMID:11704268). A distinctive feature of the P. falciparum enzyme is a redox-regulated activation: OAT physically interacts with thioredoxin, glutaredoxin, and plasmoredoxin, and thioredoxin enhances its activity in vitro (PMID:19360125). The 2.3 Å crystal structure identifies two active-site-loop cysteines, Cys154 and Cys163, absent from human OAT and conserved across Plasmodium, that mediate the thioredoxin interaction and drive an ~10-fold activation not seen for the human enzyme; Cys154 is additionally required for optimal enzymatic activity, consistent with a role in ornithine binding (PMID:20673832). OAT is not the genetic driver of the adaptive proline response underlying resistance to prolyl-tRNA synthetase inhibitors (PMID:41061700). Beyond these findings, the in vivo metabolic role and essentiality of PF3D7_0608800 have not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1993 Low

    Establishing that P. falciparum encodes a candidate ornithine aminotransferase provided the molecular starting point for characterizing amino-acid metabolism in the parasite.

    Evidence Molecular cloning and sequencing of a putative OAT gene

    PMID:8264733

    Open questions at the time
    • Abstract unavailable; enzymatic activity not demonstrated at this stage
    • No functional or localization data
  2. 2001 High

    Whether the gene product was catalytically active and metabolically important was resolved by reconstituting the enzyme and measuring its reactions, inhibition, and flux contribution.

    Evidence Heterologous expression, in vitro transamination assays, substrate profiling, canaline inhibitor kinetics, and radiolabeled precursor incorporation in P. falciparum 3D7

    PMID:11704268

    Open questions at the time
    • Physiological direction of the reaction in vivo not established
    • Consequence of the low glutamine-to-ornithine flux for parasite metabolism unresolved
    • No genetic knockout of the gene
  3. 2009 High

    The question of how OAT activity is regulated was addressed by identifying redoxin partners and showing thioredoxin functionally activates the enzyme.

    Evidence Active-site mutant affinity trapping with MS identification, BIAcore SPR binding verification for Trx and Grx, and in vitro activity assay

    PMID:19360125

    Open questions at the time
    • Structural basis of the Trx interaction not defined at this stage
    • Physiological significance of redox regulation in vivo not tested
  4. 2010 High

    The structural and molecular basis of Plasmodium-specific redox activation was resolved, revealing parasite-unique active-site cysteines that could be targeted for selective inhibition.

    Evidence 2.3 Å X-ray crystallography, site-directed mutagenesis of Cys154 and Cys163, enzyme assays, and comparative analysis with human OAT

    PMID:20673832

    Open questions at the time
    • Redox activation demonstrated in vitro but not in living parasites
    • Whether the ~10-fold activation modulates flux under physiological conditions unknown
  5. 2025 Medium

    Whether OAT mediates parasite adaptation to prolyl-tRNA synthetase inhibitors was tested and excluded, refining the pathway responsible for the adaptive proline response.

    Evidence Genetic mapping of resistance mutations, reversion of PfApiAT2 to wild type, and metabolomic proline measurement in P. falciparum

    PMID:41061700

    Open questions at the time
    • Negative result establishing non-involvement rather than a positive OAT function
    • Does not address OAT's role in other metabolic contexts

Open questions

Synthesis pass · forward-looking unresolved questions
  • The in vivo metabolic role, essentiality, and druggability of PF3D7_0608800 in the parasite life cycle remain to be defined.
  • No knockout/conditional knockdown of OAT reported
  • Subcellular localization not established
  • Physiological relevance of redox activation in vivo untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1993 A putative ornithine aminotransferase gene of P. falciparum (PF3D7_0608800) was identified and characterized at the molecular level. Gene characterization (cloning/sequencing) Molecular and biochemical parasitology Low 8264733
2001 P. falciparum OAT (PF3D7_0608800) was cloned, expressed, and shown to catalyze the reversible transamination of ornithine or N-acetylornithine with alpha-ketoglutarate, and of glutamate-5-semialdehyde with glutamate and alanine; the enzyme displays narrow substrate specificity. The ornithine analogue canaline inhibits OAT uncompetitively with a Ki of 492 ± 98 nM. Radiolabeling experiments showed that P. falciparum converts only 0.68% of exogenous glutamine to ornithine over 3.5 h, indicating the OAT-mediated biosynthetic route from glutamine to ornithine is of limited quantitative importance. Heterologous expression, in vitro enzymatic assay, substrate specificity profiling, inhibitor kinetics, radiolabeled precursor incorporation Molecular and biochemical parasitology High 11704268
2009 P. falciparum OAT (PF3D7_0608800) physically interacts with thioredoxin (Trx), glutaredoxin (Grx), and plasmoredoxin (Plrx); binding of Trx and Grx to OAT was verified by BIAcore surface plasmon resonance, and Trx was shown to enhance OAT enzymatic activity in vitro. Active-site mutant affinity trapping of target proteins from P. falciparum cell extracts, mass spectrometry identification, BIAcore surface plasmon resonance binding verification, in vitro enzymatic activity assay PLoS pathogens High 19360125
2010 The crystal structure of P. falciparum OAT (PF3D7_0608800) was solved at 2.3 Å resolution, revealing that the substrate-binding loop contains two cysteines (Cys154 and Cys163) absent in human OAT. Site-directed mutagenesis showed that Cys154 and Cys163 mediate interaction with Trx; additionally, the Cys154→Ser mutant has strongly reduced enzymatic activity, consistent with a role for Cys154 in ornithine binding. Trx activates P. falciparum OAT ~10-fold, an effect not observed for the human enzyme, and these cysteines are conserved across Plasmodium species but absent in other organisms. X-ray crystallography (2.3 Å), site-directed mutagenesis (Cys154Ser, Cys163 mutants), in vitro enzymatic activity assays, comparative structural analysis with human OAT Journal of molecular biology High 20673832
2025 Loss-of-function mutations in PfApiAT2 (not in arginase or OAT/PF3D7_0608800) are the primary genetic driver of the adaptive proline response (APR) in P. falciparum resistance to prolyl-tRNA synthetase inhibitors; alterations in OAT were explicitly ruled out as mediators of the APR. Genetic mapping of resistance mutations, reversion of PfApiAT2 mutations to wild type, metabolomics (intracellular proline measurement) Cell chemical biology Medium 41061700

Source papers

Stage 0 corpus · 5 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Identification of proteins targeted by the thioredoxin superfamily in Plasmodium falciparum. PLoS pathogens 69 19360125
2001 Characterization of the ornithine aminotransferase from Plasmodium falciparum. Molecular and biochemical parasitology 32 11704268
2010 Redox regulation of Plasmodium falciparum ornithine δ-aminotransferase. Journal of molecular biology 31 20673832
1993 Characterization of a putative ornithine aminotransferase gene of Plasmodium falciparum. Molecular and biochemical parasitology 5 8264733
2025 Disruption of P. falciparum amino acid transporter elevates intracellular proline and induces resistance to Prolyl-tRNA synthetase inhibitors. Cell chemical biology 4 41061700