Affinage · Plasmodium

PI3K

PF3D7_0515300 · phosphatidylinositol 3-kinase

Annotated
2026-09-07
40 papers in source corpus 11 papers cited in narrative 11 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0515300 (PI3K) is a class III (Vps34-type) phosphatidylinositol 3-kinase and the enzyme responsible for generating phosphatidylinositol 3-phosphate (PI3P) in the intraerythrocytic stages of Plasmodium falciparum, where it is essential for parasite survival (PMID:20709789, PMID:28719180). Purified enzyme converts phosphatidylinositol to PI3P (PMID:28719180), and within the parasite the kinase localizes to vesicular compartments near the membrane and to the food/digestive vacuole while also being exported in active form to the host erythrocyte (PMID:20093402). Through its PI3P product, PI3K drives hemoglobin trafficking to the food vacuole and hemoglobin digestion (PMID:20093402), the endocytic delivery of host-cell cytosol (PMID:42611934), and stabilization of the digestive vacuole under fever-like heat stress via a PI3P–PfHsp70-1 interaction (PMID:32975513). Its lipid kinase activity requires interaction with the pseudokinase PfVps15, loss of which collapses PI3P levels and disrupts host-cytosol trafficking, apicoplast biogenesis, and mitochondrial fission (PMID:42611934). In the host erythrocyte, PI3K activates an erythrocytic E3 ubiquitin ligase to drive selective ubiquitination and degradation of α-spectrin (PMID:38470053). PI3K is a central determinant of artemisinin resistance: artemisinin endoperoxides irreversibly inhibit the enzyme after Fe2+-mediated activation (PMID:28719180), and the PfKelch13 C580Y mutation reduces PI3K polyubiquitination and proteolysis, elevating PI3K and PI3P levels, with PI3P abundance predictive of resistance across strains (PMID:25874676). Consistent with this, PI3K sustains pro-survival autophagy and mitochondrial-stress responses in artemisinin-resistant parasites, and its pharmacological inhibition reverses resistance (PMID:37173329, PMID:41286015).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2010 Medium

    Establishing what PI3K does in the parasite required knowing where it acts and what pathway depends on it; localization and inhibitor studies showed it functions in vesicular hemoglobin trafficking and is exported to the host cell.

    Evidence Subcellular fractionation, export assay, wortmannin/LY294002 inhibition, and growth assays in P. falciparum

    PMID:20093402

    Open questions at the time
    • Inhibitors used are not PI3K-specific, leaving direct enzyme attribution incomplete
    • Substrate specificity of the exported enzyme in the host cell not defined
  2. 2010 Medium

    Whether PI3K is dispensable was unknown; a failed knockout in P. berghei and inhibitor sensitivity in P. falciparum established it as an essential blood-stage kinase producing PI3P in late stages.

    Evidence Gene deletion attempt in P. berghei, inhibitor treatment and PI3P quantification in P. falciparum

    PMID:20709789

    Open questions at the time
    • Essentiality inferred from knockout failure rather than conditional depletion
    • Unusual gene size/insertions not functionally dissected
  3. 2015 High

    The mechanistic basis of artemisinin resistance was unresolved; linking PfKelch13 to PI3K showed that reduced PI3K ubiquitination and proteolysis elevates PI3P, the key mediator of resistance.

    Evidence Biochemical inhibition, PfPI3K–PfKelch13 Co-IP, polyubiquitination and proteolysis assays, PI3P quantification across clinical and transgenic strains

    PMID:25874676

    Open questions at the time
    • Downstream effectors of elevated PI3P in conferring resistance not fully defined
    • Direct enzymology of artemisinin inhibition not established in this study
  4. 2017 High

    Direct enzymatic identity and drug mechanism were unproven; reconstitution with purified enzyme confirmed it is a Vps34-type PI3K producing PI3P and inhibited by artemisinin only after endoperoxide cleavage to a covalent alkylator.

    Evidence Heterologous yeast expression, purification, quantitative PI3P assay, drug inhibition, and active-site mutagenesis

    PMID:28719180

    Open questions at the time
    • No structural model of the enzyme
    • Roles of individual mutated catalytic/N-lobe residues in vivo not tested
  5. 2020 High

    How PI3P protects the parasite was unclear; identifying PfHsp70-1 as a PI3P-binding protein linked PI3K activity to digestive vacuole stability under fever-like heat stress.

    Evidence Live-cell PI3P reporters, inhibitor treatment, chemoproteomic pulldown, and PfHsp70-1 knockdown in P. falciparum

    PMID:32975513

    Open questions at the time
    • Structural basis of PI3P–PfHsp70-1 binding not defined
    • Whether other PI3P effectors contribute to DV stability unknown
  6. 2020 Medium

    Assessing target selectivity of antimalarial candidates required testing off-target kinases; the PfPI4KIIIβ candidate MMV390048 was found to also inhibit purified PI3K.

    Evidence In vitro enzyme inhibition assay with purified PfPI3K and PfPI4KIIIβ

    PMID:32543181

    Open questions at the time
    • Cellular consequence of dual inhibition not tested
    • Single in vitro method
  7. 2023 Medium

    The survival advantage of resistant parasites was unexplained; PI3K was shown to be required for the elevated pro-survival autophagy in PfK13-mutant parasites.

    Evidence Autophagic flux assays and PI3K inhibition in PfK13-R539T versus wild-type parasites

    PMID:37173329

    Open questions at the time
    • Molecular link between PI3P and autophagy machinery not defined
    • Pharmacological rather than genetic PI3K depletion
  8. 2024 Medium

    The exported kinase's host-cell function was undefined; PI3K was shown to activate an erythrocytic E3 ligase driving selective α-spectrin ubiquitination and degradation, supporting parasite development.

    Evidence Expression profiling, ubiquitination assays, kinase/Co-IP assays, and PI3K inhibition in vitro and in a P. berghei mouse model

    PMID:38470053

    Open questions at the time
    • Identity of the erythrocytic E3 ligase substrate site not fully mapped
    • Direct kinase-substrate relationship of PI3K to the ligase not structurally resolved
  9. 2026 High

    The regulatory partner controlling PI3K activity in vivo was unknown; knock-sideways of PfVps15 showed the PfVps15–PI3K interaction is required for PI3P synthesis, host-cytosol trafficking, and organelle biogenesis.

    Evidence Reciprocal Co-IP, knock-sideways mislocalisation, PI3P quantification, and live imaging of trafficking and organelle dynamics in P. falciparum

    PMID:42611934

    Open questions at the time
    • Whether PI3K forms a defined multi-subunit complex remains unresolved (unlike yeast/mammalian heterotetramers)
    • Mechanism by which PfVps15 activates PI3K not defined
  10. 2026 Medium

    The role of PI3K in artemisinin recrudescence was unclear; expansion-microscopy localization plus inhibition linked PI3K activity to mitochondrial stress (Mtphagy) and delayed recrudescence after DHA.

    Evidence Expansion microscopy, PI3K pathway inhibition with Mtphagy assay, and recrudescence assays after DHA in P. falciparum

    PMID:42429611

    Open questions at the time
    • Molecular connection between PI3P and mitochondrial dynamics not defined
    • Pharmacological inhibition of a 'pathway' rather than direct PI3K depletion
  11. 2025 Medium

    Whether PI3K inhibition could be therapeutically exploited was open; idelalisib lowered PI3P and triggered ROS, apoptosis-like death, proteotoxic stress, and synergized with DHA to reverse resistance.

    Evidence PfPI3K activity assay, PI3P quantification, ROS/ubiquitin/eIF2α phosphorylation readouts, and idelalisib–DHA combination assays in P. falciparum

    PMID:41286015

    Open questions at the time
    • Idelalisib selectivity for PI3K over other parasite kinases not established
    • No structural/mutagenesis validation of on-target engagement

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown how PI3P generated by PI3K is spatially and mechanistically coupled to its many downstream processes (hemoglobin trafficking, DV stability, autophagy, host α-spectrin degradation, organelle dynamics) and whether a defined PI3K complex organizes these outputs.
  • No structural model of PI3K or its PfVps15 interface
  • Effector proteins reading PI3P at each compartment largely uncharacterized beyond PfHsp70-1
  • Direct regulation of resistance-associated autophagy at the molecular level unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 PI3K (PfPI3K) is exported to the host erythrocyte by the parasite in an active form. Within the parasite, it localizes to vesicular compartments near the membrane and in the food vacuole. It can generate various 3'-phosphorylated PIPs. Inhibition of PfPI3K by wortmannin or LY294002 resulted in entrapment of hemoglobin in vesicles in the parasite cytoplasm, preventing its transport to the food vacuole, attenuating hemoglobin digestion and parasite growth. Subcellular fractionation and export assay, PI3K inhibitor treatment (wortmannin, LY294002), fluorescence microscopy, in vitro parasite growth assay Blood Medium 20093402
2010 The PI3K gene could not be deleted in P. berghei, indicating it is essential in Plasmodium blood stages. In P. falciparum, in vitro growth was sensitive to a PI3K inhibitor. The class III PI3K encoded by the Plasmodium genome is of unusual size with large insertions and repetitive sequence motifs. PI3P production was parasite-dependent, sensitive to a PI3K inhibitor, and predominant in late parasite stages. Gene deletion attempt (knockout failure) in P. berghei, PI3K inhibitor treatment in P. falciparum, PI3P quantification in parasite-infected erythrocytes Eukaryotic cell Medium 20709789
2015 Artemisinins are potent inhibitors of PfPI3K. In artemisinin-resistant clinical strains, increased PfPI3K levels were associated with the C580Y mutation in PfKelch13. Polyubiquitination of PfPI3K and its binding to PfKelch13 were reduced by the PfKelch13 C580Y mutation, limiting proteolysis of PfPI3K and thereby increasing kinase levels and its lipid product PI3P. Elevated PI3P was identified as the key mediator of artemisinin resistance. PI3P levels were predictive of artemisinin resistance across clinical and laboratory parasite strains. Biochemical inhibition assays, polyubiquitination assay, co-immunoprecipitation (PfPI3K–PfKelch13 binding), PI3P quantification in clinical and engineered parasites, transgenic parasite expression, proteolysis assays Nature High 25874676
2017 PfPI3K is a class III ('Vps34'-type) PI3K. When heterologously expressed in yeast and purified to homogeneity, it produces phosphatidylinositol 3'-phosphate from phosphatidylinositol. It is inhibited by artemisinin and related drugs, but only under conditions that cleave the endoperoxide bridge to generate reactive alkylating agents (i.e., irreversible inhibition by Fe2+-mediated covalent modification). Mutagenesis of key residues in the catalytic and N-lobe domains was used to investigate their importance. Heterologous expression in yeast, protein purification to homogeneity, quantitative PI3P production assay, drug inhibition assay, active-site mutagenesis Biochemistry High 28719180
2020 PI3P generated by PfPI3K stabilizes the digestive vacuole (DV) under heat stress. PI3K inhibitors destabilized the DV before parasite death, and this was reversible upon withdrawal of the inhibitor and heat stress. A chemoproteomic approach identified PfHsp70-1 as a PI3P-binding protein. Knockdown of PfHsp70-1 phenocopied PI3P-deficient parasites under heat shock, and PfHsp70-1 downregulation hypersensitized parasites to heat shock and PI3K inhibitors, establishing a mechanistic link between PI3P and PfHsp70-1 in DV stabilization during fever-like stress. Live cell microscopy with chemical and genetic PI3P reporters, PI3K inhibitor treatment, chemoproteomic pulldown to identify PI3P-binding proteins, Hsp70-1 knockdown, Hsp70 inhibitor treatment eLife High 32975513
2020 MMV390048, a putative PfPI4KIIIβ inhibitor in advanced trials, was found to also potently inhibit PfPI3K (PfVps34) in vitro using purified enzyme, demonstrating dual PIK inhibitory activity. In vitro enzyme inhibition assay with purified PfPI3K and PfPI4KIIIβ proteins Biochemistry Medium 32543181
2023 PfK13-R539T ART-resistant parasites exhibited increased basal autophagy compared to wild-type. Suppression of PI3K activity rendered ART-resistant parasites unable to survive, establishing PI3K as a master autophagy regulator required for the pro-survival autophagic response in ART-resistant parasites. Autophagic flux assays, PI3K inhibitor treatment of PfK13-R539T and wild-type parasites, parasite survival assays Cell death discovery Medium 37173329
2024 PfPI3K is upregulated in P. falciparum-infected red blood cells during intraerythrocytic development. PfPI3K phosphorylated and activated erythrocytic ubiquitin-protein E3 ligase, leading to increased ubiquitination and selective degradation of α-spectrin (but not β-spectrin) of the host erythrocyte. Inhibition of PfPI3K activity impaired P. falciparum development in vitro and P. berghei infectivity in mice. Western blot for PfPI3K expression, ubiquitination assays of erythrocytic α-spectrin, PI3K inhibitor treatment in vitro and in vivo (mouse model), co-immunoprecipitation/kinase activity assays mBio Medium 38470053
2026 PfPI3K interacts with PfVps15 (a pseudokinase/Vps15 orthologue) as shown by co-immunoprecipitation, but unlike in yeast and mammalian cells, they are potentially not part of a heterotetrameric complex. Knock-sideways removal of PfVps15 led to rapid parasite death, decreased PI3P levels, abrogation of host-cell cytosol delivery to the food vacuole, and defects in apicoplast biogenesis and mitochondrial fission, establishing that the PfVps15–PfPI3K interaction is required for PI3P synthesis and vesicular trafficking of host-cell cytosol. Co-immunoprecipitation (PfVps15–PfPI3K interaction), knock-sideways conditional mislocalisation, PI3P level quantification, live-cell fluorescence microscopy of vesicular trafficking, apicoplast and mitochondrion dynamics PLoS pathogens High 42611934
2026 PI3K was characterised for the first time via expansion microscopy in P. falciparum. Inhibition of the PI3K-mediated pathway significantly reduced the number of Mtphagy-positive parasites (mitochondrial stress marker) and was associated with delayed recrudescence in DHA-treated parasites, implicating PI3K activity in the mitochondrial dynamics underlying artemisinin-induced growth arrest and recrudescence. Expansion microscopy (PI3K localisation), PI3K pathway inhibition combined with Mtphagy fluorescence assay, recrudescence assays after DHA treatment mSphere Medium 42429611
2025 Idelalisib, a PI3K inhibitor, effectively inhibited PfPI3K activity in P. falciparum, causing a decline in PI3P levels. This led to ROS accumulation, apoptosis-like parasite death, and accumulation of ubiquitinated proteins, downregulation of molecular chaperone gene expression, and increased eIF2α phosphorylation. Combination of idelalisib with dihydroartemisinin exerted synergistic antimalarial effects and reversed ART resistance. PfPI3K activity assay with idelalisib, PI3P level quantification, ROS measurement, ubiquitinated protein quantification, gene expression analysis of chaperones, eIF2α phosphorylation assay, in vitro drug combination assay Communications biology Medium 41286015

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria. Nature 423 25874676
2018 Drug resistance in Plasmodium. Nature reviews. Microbiology 301 29355852
2010 PfPI3K, a phosphatidylinositol-3 kinase from Plasmodium falciparum, is exported to the host erythrocyte and is involved in hemoglobin trafficking. Blood 117 20093402
2010 Phosphatidylinositol 3-phosphate, an essential lipid in Plasmodium, localizes to the food vacuole membrane and the apicoplast. Eukaryotic cell 105 20709789
2019 Artemisinin Bioactivity and Resistance in Malaria Parasites. Trends in parasitology 93 31699532
2015 High-throughput matrix screening identifies synergistic and antagonistic antimalarial drug combinations. Scientific reports 89 26403635
2011 Phylogenomics of phosphoinositide lipid kinases: perspectives on the evolution of second messenger signaling and drug discovery. BMC evolutionary biology 86 21208444
2016 Plasmodium falciparum: multifaceted resistance to artemisinins. Malaria journal 79 26955948
2015 Understanding artemisinin-resistant malaria: what a difference a year makes. Current opinion in infectious diseases 74 26237549
2016 LAP-like process as an immune mechanism downstream of IFN-γ in control of the human malaria Plasmodium vivax liver stage. Proceedings of the National Academy of Sciences of the United States of America 70 27185909
2012 Ingested human insulin inhibits the mosquito NF-κB-dependent immune response to Plasmodium falciparum. Infection and immunity 59 22473605
2015 Extensive differential protein phosphorylation as intraerythrocytic Plasmodium falciparum schizonts develop into extracellular invasive merozoites. Proteomics 52 25886026
2011 Reactive oxygen species-dependent cell signaling regulates the mosquito immune response to Plasmodium falciparum. Antioxidants & redox signaling 47 21126166
2004 PfPKB, a novel protein kinase B-like enzyme from Plasmodium falciparum: I. Identification, characterization, and possible role in parasite development. The Journal of biological chemistry 37 15024016
2018 Identification of Hsp90 Inhibitors with Anti-Plasmodium Activity. Antimicrobial agents and chemotherapy 34 29339390
2020 Phosphatidylinositol 3-phosphate and Hsp70 protect Plasmodium falciparum from heat-induced cell death. eLife 32 32975513
2017 Heterologous Expression, Purification, and Functional Analysis of Plasmodium falciparum Phosphatidylinositol 3'-Kinase. Biochemistry 18 28719180
2018 PIK-ing New Malaria Chemotherapy. Trends in parasitology 15 29934102
2020 Heterologous Expression, Purification, and Functional Analysis of the Plasmodium falciparum Phosphatidylinositol 4-Kinase IIIβ. Biochemistry 14 32543181
2018 Current scenario and future strategies to fight artemisinin resistance. Parasitology research 14 30478733
2015 Amino acid efflux by asexual blood-stage Plasmodium falciparum and its utility in interrogating the kinetics of hemoglobin endocytosis and catabolism in vivo. Molecular and biochemical parasitology 12 26215764
2023 Cytoprotective autophagy as a pro-survival strategy in ART-resistant malaria parasites. Cell death discovery 10 37173329
2021 An integrated virtual screening and drug repurposing strategy for the discovery of new antimalarial drugs against Plasmodium falciparum phosphatidylinositol 3-kinase. Journal of cellular biochemistry 10 33998049
2024 Plasmodium falciparum selectively degrades α-spectrin of infected erythrocytes after invasion. mBio 7 38470053
2018 Pumilacidins from the Octocoral-Associated Bacillus sp. DT001 Display Anti-Proliferative Effects in Plasmodium falciparum. Molecules (Basel, Switzerland) 7 30158478
2015 A crucial piece in the puzzle of the artemisinin resistance mechanism in Plasmodium falciparum. Trends in parasitology 7 26169358
2024 Mutations in Plasmodium falciparum Kelch13 (PfK13) dysregulates PI3K/AKT signalling pathway in artemisinin resistance. Indian journal of medical microbiology 6 39079616
2022 Integrated Network Pharmacology Analysis and Serum Metabolomics to Reveal the Anti-malaria Mechanism of Artesunate. ACS omega 6 36092633
2018 Genetic diversity of the Plasmodium vivax phosphatidylinositol 3-kinase gene in two regions of the China-Myanmar border. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 4 29462718
2024 Oleuropein: a viable therapeutic option for malaria and cancer. Drug discovery today 3 39608487
2015 Drug-resistant Plasmodium falciparum: are recent advances a cause for optimism? Future microbiology 2 26226625
2025 Chrysosplenetin acts as a homeostasis stabilizer with dual-function in shattering Plasmodium berghei K173 resistance to artemisinin driven by both ABC transporters and heme-ROS/GSH axis. Parasites & vectors 1 41068871
2024 Protocol for oleuropein-induced autophagy mediating drug tolerance in P. falciparum. STAR protocols 1 38905105
2026 Insights into the factors contributing to artemisinin resistance in Plasmodium falciparum. Transactions of the Royal Society of Tropical Medicine and Hygiene 0 42033324
2026 Hemozoin-induced immunomodulation and prostate carcinogenesis: mechanisms and implications. Frontiers in oncology 0 42158411
2026 Cell cycle checkpoint activity in the malaria parasite Plasmodium falciparum. mSphere 0 42429611
2026 The malaria parasite Plasmodium falciparum Vps15 is a Phosphatidylinositol 3-kinase interactor important for host-cell cytosol delivery to the food vacuole and apicoplast and mitochondrion dynamics. PLoS pathogens 0 42611934
2025 Anti-malarial potential of novel aminoalkylated eugenol derivatives: synthesis, in-vitro, in-silico evaluation and mechanistic profiling. Biochemical and biophysical research communications 0 41033119
2025 PfPI3K inhibition reversed artemisinin resistance by increasing ROS and ubiquitinated protein levels in Plasmodium falciparum. Communications biology 0 41286015
2025 Fluorescence-based bioassay for the detection of changes in mitochondrial physiology during artemisinin-induced growth arrest of blood-stage Plasmodium falciparum. Scientific reports 0 41422273