Affinage · Plasmodium

PF3D7_0418600

regulator of chromosome condensation, putative

Audit flag: identity unverified
Annotated
2026-09-07
2 papers in source corpus 1 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0418600 (PfRCC-PIP) is an essential P. falciparum scaffolding protein that functions as a dual anchoring platform for a kinase and a phosphatase (PMID:30429842). It directly binds the parasite phosphatase PfPP1 both in vitro and as a complex in parasite lysate, serving as a major PfPP1 partner (PMID:30429842), and it acts as a positive regulator of PP1 activity — in the heterologous Xenopus oocyte system it interacts with endogenous PP1 and synergizes with suboptimal progesterone doses to trigger oocyte maturation (PMID:30429842). Through its RCC1-motif-containing region it additionally binds the calcium-dependent kinase CDPK7, positioning the protein to co-anchor kinase and phosphatase activities (PMID:30429842). Attempted gene knock-out failed to yield viable parasites, indicating that PF3D7_0418600 is essential for parasite viability (PMID:30429842). Beyond these interactions and the essentiality inference, no further mechanistic detail — including physiological substrates, structural basis of binding, or the parasite processes it regulates — has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2018 Medium

    Establishing that PF3D7_0418600 is a bona fide PfPP1 partner answered whether this putative RCC1-motif protein physically engages the phosphatase machinery.

    Evidence In vitro binding assay plus co-immunoprecipitation from P. falciparum parasites

    PMID:30429842

    Open questions at the time
    • Binding interface and stoichiometry of the PfPP1 complex not defined
    • Single lab; interaction not independently replicated
    • No identification of substrates dephosphorylated by the complex
  2. 2018 Medium

    The Xenopus oocyte assay addressed whether the interaction is functionally regulatory, showing PF3D7_0418600 acts as a positive modulator of PP1 activity rather than a passive binding partner.

    Evidence Heterologous Xenopus oocyte maturation assay with suboptimal progesterone

    PMID:30429842

    Open questions at the time
    • Activation demonstrated in a heterologous system, not on native PfPP1 substrates in parasite
    • Mechanism by which it enhances PP1 activity unknown
  3. 2018 Medium

    Failed knock-out attempts addressed whether the gene is dispensable, indicating it is essential for asexual parasite viability.

    Evidence Reverse genetics (attempted gene knock-out) in P. falciparum

    PMID:30429842

    Open questions at the time
    • Essentiality inferred from failed KO, not confirmed by conditional depletion
    • Which molecular function underlies essentiality is unresolved
    • Stage-specific requirement not defined
  4. 2018 Medium

    Mapping the CDPK7 interaction to the RCC1-motif region addressed whether PF3D7_0418600 links a kinase as well as a phosphatase, establishing it as a dual kinase/phosphatase anchoring protein.

    Evidence In vitro pulldown using the defined RCC1-motif-containing region

    PMID:30429842

    Open questions at the time
    • CDPK7 binding shown in vitro only; not validated in parasite
    • Whether PfPP1 and CDPK7 occupy the scaffold simultaneously is untested
    • Functional consequence of CDPK7 anchoring not measured

Open questions

Synthesis pass · forward-looking unresolved questions
  • The physiological substrates, parasite processes, and structural basis by which PF3D7_0418600 coordinates PfPP1 and CDPK7 remain unknown.
  • No native substrate of the PP1/CDPK7 scaffold identified
  • No structural model of the interactions or the RCC1-motif region
  • Cellular process regulated by the complex is uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
PF3D7_0418600–PfPP1 complex (in parasite)

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2018 PF3D7_0418600 (PfRCC-PIP) directly interacts with PfPP1 (Protein Phosphatase type-1) in vitro and forms a complex with PfPP1 in the parasite, acting as a major partner of PfPP1. In vitro binding assay and co-immunoprecipitation in P. falciparum parasites Frontiers in microbiology Medium 30429842
2018 PF3D7_0418600 (PfRCC-PIP) interacts with endogenous PP1 in the Xenopus oocyte model and acts in synergy with suboptimal doses of progesterone to trigger oocyte maturation, indicating a regulatory (activating) effect on PP1. Xenopus oocyte functional assay Frontiers in microbiology Medium 30429842
2018 Reverse genetic studies failed to produce viable knock-out parasites for PF3D7_0418600 (PfRCC-PIP), suggesting it is essential for parasite viability. Reverse genetics (attempted gene knock-out) Frontiers in microbiology Medium 30429842
2018 The RCC1-motif-containing region of PF3D7_0418600 (PfRCC-PIP) directly interacts with the parasite kinase CDPK7, indicating that this protein serves as both a kinase and a phosphatase anchoring protein. In vitro protein interaction assay (pulldown with defined protein region) Frontiers in microbiology Medium 30429842

Source papers

Stage 0 corpus · 2 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2018 Characterization of a Protein Phosphatase Type-1 and a Kinase Anchoring Protein in Plasmodium falciparum. Frontiers in microbiology 11 30429842
2025 A Potential Regulatory Network of Selected Human Erythrocytic miRNAs with Plasmodium falciparum 3D7 mRNAs: A Computational Analysis. MicroRNA (Shariqah, United Arab Emirates) 0 39950472