Affinage · Plasmodium

YVH1

PF3D7_0309000 · dual specificity protein phosphatase

Annotated
2026-09-08
6 papers in source corpus 1 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0309000 (YVH1) encodes a dual-specificity protein phosphatase of P. falciparum that dephosphorylates both phosphoserine and phosphotyrosine residues in vitro, and whose catalytic activity depends allosterically on zinc coordinated within a C-terminal zinc-binding domain (PMID:14698441). The recombinant protein binds two moles of zinc per mole of protein through a cluster of one histidine and eight cysteines, and Cys-to-Ala mutations that abolish zinc binding drastically reduce phosphatase activity, establishing zinc as an allosteric requirement for catalysis (PMID:14698441). Across erythrocytic development the protein is expressed at essentially all stages and shuttles between the nucleus and cytoplasm in a stage-specific manner (PMID:14698441), and it physically associates with PfPES, a Plasmodium ortholog of the nuclear pescadillo protein, linking YVH1 to the regulation of parasite development (PMID:14698441). Beyond these findings, the physiological substrates of YVH1 and the functional consequences of its nucleocytoplasmic shuttling and PfPES interaction have not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2004 High

    Whether PF3D7_0309000 is a genuine catalytically active phosphatase and how its activity is controlled was unknown; demonstrating dual-specificity activity and a zinc-dependent allosteric mechanism established both its enzymatic identity and its regulatory logic.

    Evidence Recombinant protein in vitro phosphatase assays on phosphoserine/phosphotyrosine substrates, zinc quantification, and site-directed Cys mutagenesis

    PMID:14698441

    Open questions at the time
    • No physiological substrate identified in cells
    • Structural basis of zinc-dependent allostery not resolved
    • Whether zinc occupancy is regulated in vivo is unknown
  2. 2004 Medium

    Where and when the phosphatase acts during the blood stage was undefined; showing stage-wide expression with stage-specific nucleocytoplasmic shuttling placed the enzyme in a dynamic compartmental context during erythrocytic development.

    Evidence Stage-specific expression analysis and subcellular fractionation across erythrocytic stages

    PMID:14698441

    Open questions at the time
    • Functional consequence of shuttling not demonstrated
    • Trigger and machinery controlling nuclear-cytoplasmic partitioning unknown
    • Localization inferred from fractionation without independent imaging in the same report
  3. 2004 Medium

    The lack of any known interaction partner left the enzyme's cellular pathway undefined; identifying a physical interaction with the nuclear pescadillo ortholog PfPES tied YVH1 to a candidate developmental-regulatory context.

    Evidence Co-immunoprecipitation / protein-protein interaction assay

    PMID:14698441

    Open questions at the time
    • Single pulldown without reciprocal validation
    • Whether PfPES is a dephosphorylation substrate versus a scaffolding partner is unknown
    • Functional consequence of the interaction not tested by epistasis or rescue

Open questions

Synthesis pass · forward-looking unresolved questions
  • The in vivo substrates, the biological purpose of stage-specific shuttling, and the functional role of the PfPES interaction in parasite development remain unresolved.
  • No physiological substrate identified
  • No genetic loss-of-function phenotype in the corpus
  • Functional meaning of the YVH1-PfPES association undetermined

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2004 Recombinant YVH1 (PfYVH1/PF3D7_0309000) dephosphorylates both phosphoserine and phosphotyrosine residues in vitro, confirming dual-specificity phosphatase activity. The protein contains 2 mol of zinc per mol protein in its C-terminal zinc-binding domain (one histidine, eight cysteines). Mutation of specific Cys residues in the putative zinc finger region abolished zinc binding and drastically reduced phosphatase activity, indicating an allosteric role of zinc in catalysis. Recombinant protein expression, in vitro phosphatase assay with phosphoserine/phosphotyrosine substrates, zinc content analysis, site-directed mutagenesis of Cys residues Molecular and biochemical parasitology High 14698441
2004 YVH1 (PfYVH1) is expressed in essentially all erythrocytic stages of P. falciparum and shuttles between the nucleus and the cytoplasm in a stage-specific manner. Stage-specific expression analysis and subcellular fractionation/localization across erythrocytic stages Molecular and biochemical parasitology Medium 14698441
2004 YVH1 (PfYVH1) physically interacts with PfPES, a Plasmodium ortholog of the nuclear pescadillo protein, implicating YVH1 in regulation of parasitic development. Co-immunoprecipitation / protein-protein interaction assay (interaction of recombinant or expressed proteins) Molecular and biochemical parasitology Medium 14698441

Source papers

Stage 0 corpus · 6 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 The protein-phosphatome of the human malaria parasite Plasmodium falciparum. BMC genomics 57 18793411
2004 A zinc-binding dual-specificity YVH1 phosphatase in the malaria parasite, Plasmodium falciparum, and its interaction with the nuclear protein, pescadillo. Molecular and biochemical parasitology 27 14698441
2022 Deciphering the Role of Protein Phosphatases in Apicomplexa: The Future of Innovative Therapeutics? Microorganisms 0 35336160
2022 Phosphatase inhibitors BVT-948 and alexidine dihydrochloride inhibit sexual development of the malaria parasite Plasmodium berghei. International journal for parasitology. Drugs and drug resistance 0 35792443
2021 A Plasmodium falciparum protein tyrosine phosphatase inhibitor identified from the ChEMBL-NTD database blocks parasite growth. FEBS open bio 0 33934569
2014 Genome wide in silico analysis of Plasmodium falciparum phosphatome. BMC genomics 0 25425018