Affinage · Plasmodium

PF3D7_0305700

ubiquitin-conjugating enzyme MMS2, putative

Audit flag: identity unverified
Annotated
2026-09-07
3 papers in source corpus 3 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0305700 is an active E2-conjugating enzyme of Plasmodium falciparum that operates in both the SUMO and ubiquitin conjugation systems during asexual blood-stage development (PMID:26697886, PMID:40249735). In the SUMO pathway, it functions as the E2-conjugating enzyme that engages the P. falciparum SUMO E1-activating enzyme through surface residues distinct from the human E1–E2 interface (PMID:26697886), and this SUMOylation activity contributes to protecting trophozoite-stage parasites against iron-induced oxidative stress (PMID:26697886). The parasite enzyme also displays species-specific SUMO recognition: whereas Pf-SUMO can engage human E2, Hs-SUMO1 fails to interact with PF3D7_0305700, a selectivity governed by critical N-terminal residues whose mutation to the human counterparts restores the cross-species interaction (PMID:35331687). In the ubiquitin pathway, PF3D7_0305700 was captured as a catalytically active E2 by a ubiquitin activity-based probe and validated in vitro, and it shows selective functional interaction with the HECT E3 ligase PfHEUL (PMID:40249735). Beyond these activities, the enzyme's full substrate repertoire and its in vivo genetic requirement remain uncharacterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2015 High

    Establishing how the parasite SUMO E2 engages its E1 partner was needed to define whether the conjugation interface diverges from the human system and could be selectively targeted; crystallography plus mutagenesis showed the P. falciparum E1–E2 interaction uses surface residues distinct from the human interface.

    Evidence X-ray crystallography of the human E1 ubiquitin fold domain–Ubc9 complex with in silico modeling, site-directed mutagenesis, and in vitro biochemistry of the P. falciparum enzymes

    PMID:26697886

    Open questions at the time
    • No crystal structure of the P. falciparum E1–E2 complex itself
    • SUMO substrates conjugated via this E2 not identified
  2. 2015 Medium

    It was unclear whether SUMOylation had a defined physiological role in blood-stage parasites; oxidative-stress assays linked SUMOylation pathway activity, in which PF3D7_0305700 acts as the E2, to protection of trophozoites under iron-induced oxidative stress.

    Evidence Cell-based oxidative stress assays on asexual blood-stage P. falciparum

    PMID:26697886

    Open questions at the time
    • Indirect readout without direct genetic perturbation of PF3D7_0305700
    • Protective mechanism and relevant SUMOylated targets undefined
  3. 2022 Medium

    To determine the structural basis of SUMO recognition specificity, cross-species interaction tests asked whether parasite and human components are interchangeable; they revealed a unidirectional interaction in which Hs-SUMO1 fails to engage PF3D7_0305700 owing to critical N-terminal residues, restorable by humanizing those residues.

    Evidence Biochemical and biophysical interaction analyses with site-directed mutagenesis and reciprocal cross-species interaction tests

    PMID:35331687

    Open questions at the time
    • Consequences of the specificity for in vivo SUMO conjugation not tested
    • Single-lab biophysical characterization
  4. 2025 Medium

    Whether PF3D7_0305700 also acts as a bona fide ubiquitin E2 in living parasites was open; activity-based probe capture during blood-stage growth plus in vitro ubiquitination confirmed it as an active ubiquitin-conjugating enzyme with selective interaction with the HECT E3 PfHEUL.

    Evidence Activity-based protein profiling with a Ub-Dha probe during P. falciparum asexual development and in vitro ubiquitination assays

    PMID:40249735

    Open questions at the time
    • Ubiquitination substrates and chain topology not defined
    • Functional consequence of the PfHEUL interaction in vivo untested
    • Single study, single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown whether PF3D7_0305700 is genetically essential and what its physiological substrate set is across the SUMO and ubiquitin pathways in the intact parasite.
  • No conditional knockdown or knockout phenotype reported
  • No in vivo substrate identification
  • Relative contribution of SUMO versus ubiquitin conjugation roles undetermined

Mechanism profile

Synthesis pass · controlled-vocabulary classification

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2015 The P. falciparum SUMO E2-conjugating enzyme (PF3D7_0305700/PfUbc9) interacts with the P. falciparum SUMO E1-activating enzyme via surface residues that are distinct from the human E1-E2 interface, as determined by x-ray crystallography of the human E1 ubiquitin fold domain–Ubc9 complex combined with in silico modeling, mutagenesis, and in vitro biochemical studies of the P. falciparum enzymes. X-ray crystallography, in silico modeling, site-directed mutagenesis, in vitro biochemical assays The Journal of biological chemistry High 26697886
2015 SUMOylation (in which PF3D7_0305700/PfUbc9 functions as the E2-conjugating enzyme) plays a protective role in P. falciparum asexual trophozoite stages under iron-induced oxidative stress, as evidenced by the parasite's susceptibility to oxidative stress correlating with SUMOylation pathway activity. Cell-based oxidative stress assays on asexual blood-stage P. falciparum The Journal of biological chemistry Medium 26697886
2022 A unidirectional cross-species interaction exists in the SUMO conjugation system: Pf-SUMO can interact with human E2 (Ubc9), but Hs-SUMO1 fails to interact with Pf-E2 (PF3D7_0305700). Critical residues at the N-terminus of Pf-E2/PF3D7_0305700 are responsible for the diminished Hs-SUMO1–Pf-E2 interaction; mutating these to the corresponding Hs-Ubc9 residues restores cross-species interaction by re-establishing electrostatic, π-π, and hydrophobic interactions. Biochemical and biophysical interaction analyses, site-directed mutagenesis Biophysical journal Medium 35331687
2025 PF3D7_0305700 was captured as an active E2 ubiquitin-conjugating enzyme by a ubiquitin activity-based probe (Ub-Dha) during P. falciparum asexual blood-stage development, and was validated through in vitro ubiquitination assays; it was also shown to have selective functional interactions with the HECT E3 ligase PfHEUL. Activity-based protein profiling (Ub-Dha probe), in vitro ubiquitination assays PLoS pathogens Medium 40249735

Source papers

Stage 0 corpus · 3 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Characterization and Structural Insights into Selective E1-E2 Interactions in the Human and Plasmodium falciparum SUMO Conjugation Systems. The Journal of biological chemistry 14 26697886
2025 Activity-based protein profiling reveals both canonical and novel ubiquitin pathway enzymes in Plasmodium. PLoS pathogens 2 40249735
2022 Implications of critical node-dependent unidirectional cross-talk of Plasmodium SUMO pathway proteins. Biophysical journal 1 35331687