Affinage · Plasmodium

CAF1C

PF3D7_0110700 · chromatin assembly factor 1 subunit C, putative

Annotated
2026-09-07
1 papers in source corpus 1 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PF3D7_0110700 (CAF1C) is a Plasmodium falciparum histone chaperone that directly binds histone H4, established by a pulldown assay with purified recombinant protein and consistent with a role as the RbAp46/48-like subunit of the chromatin assembly factor-1 complex (PMID:32363442). The protein localizes to the nucleus and is expressed across all three asexual blood stages (ring, trophozoite, schizont) (PMID:32363442). Beyond this direct H4-binding activity and nuclear localization, the molecular mechanism and in vivo function of PF3D7_0110700 have not been characterized in the available corpus; its assignment to the CAF-1 complex and its seven-bladed WD40 β-propeller architecture rest on in silico comparison to RbAp46/48 homologs rather than on experimental structural or functional validation (PMID:32363442).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2020 Medium

    To test whether PF3D7_0110700 acts as a histone chaperone, its physical association with core histones was probed, establishing a direct H4-binding activity that anchors its candidate chromatin-assembly role.

    Evidence In vitro pulldown assay with purified recombinant PF3D7_0110700 and histone H4 (protein from E. coli)

    PMID:32363442

    Open questions at the time
    • Single pulldown method without orthogonal validation or binding-interface mutagenesis
    • Binding to other histones and to assembled nucleosomes not tested
    • Whether the interaction occurs in vivo or within an intact CAF-1 complex is unresolved
  2. 2020 Low

    To place the H4-binding activity in a cellular context, subcellular localization and stage expression were assessed, showing nuclear residence throughout asexual blood-stage development consistent with a chromatin function.

    Evidence Subcellular localization/fractionation assay and stage expression detection (western blot or equivalent) across ring, trophozoite, and schizont stages

    PMID:32363442

    Open questions at the time
    • Localization reported without demonstrated functional consequence and without orthogonal methods
    • No evidence linking nuclear presence to chromatin assembly activity in vivo
    • Gametocyte and other life-cycle stages not examined
  3. 2020 Low

    To classify PF3D7_0110700 structurally, comparative modeling was used, inferring a conserved seven-bladed WD40 β-propeller and RbAp46/48-like binding interfaces with species-specific features distinguishing it from yeast, Drosophila, and human orthologs.

    Evidence Comparative in silico sequence and structural analysis

    PMID:32363442

    Open questions at the time
    • Computational inference only, with no experimental structure
    • CAF-1 complex membership predicted by homology, not demonstrated biochemically
    • Functional significance of the species-specific features untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • The in vivo function of PF3D7_0110700, its assembly into and role within a Plasmodium CAF-1 complex, and its contribution to parasite chromatin assembly and viability remain unresolved.
  • No knockout, knockdown, or conditional-depletion phenotype reported
  • CAF-1 complex partners not experimentally identified for this subunit
  • No experimental structure or nucleosome-assembly assay

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Chromatin assembly factor-1 (CAF-1) complex — inferred by homology only [#2]

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 PF3D7_0110700 (CAF1C/PfRbAp46/48) directly interacts with histone H4, as demonstrated by pulldown assay using purified recombinant protein. Direct binding assay with purified recombinant PF3D7_0110700 and histone H4 (in vitro interaction); protein expressed and purified from E. coli Parasitology research Medium 32363442
2020 PF3D7_0110700 (CAF1C/PfRbAp46/48) localizes to the nucleus and is expressed in all three asexual blood stages (ring, trophozoite, schizont), as shown by cellular fractionation/localization experiments. Nuclear localization determined by direct experiment (subcellular localization assay); expression across asexual blood stages detected by western blot or equivalent Parasitology research Low 32363442
2020 In silico structural analysis of PF3D7_0110700 revealed conservation of the seven-bladed WD40 β-propeller conformation and characteristic binding interfaces found in RbAp46/48 homologs, with species-specific features distinguishing it from yeast, Drosophila, and human orthologs. Comparative in silico sequence and structural analysis Parasitology research Low 32363442

Source papers

Stage 0 corpus · 1 paper · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 The multifaceted histone chaperone RbAp46/48 in Plasmodium falciparum: structural insights, production, and characterization. Parasitology research 4 32363442